| Definition | Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008577 |
| Length | 4,972,204 |
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The map label for this gene is gdhB [H]
Identifier: 117921131
GI number: 117921131
Start: 3217121
End: 3217888
Strand: Direct
Name: gdhB [H]
Synonym: Shewana3_2690
Alternate gene names: 117921131
Gene position: 3217121-3217888 (Clockwise)
Preceding gene: 117921130
Following gene: 117921132
Centisome position: 64.7
GC content: 53.26
Gene sequence:
>768_bases ATGGCAGTGTTACAGGGAAAGGTCGCAATCATTACAGGGGCAAGTTCGGGGATTGGTTATGCCACCGCAAAACGCTTTGC CCGTGAAGGCGCAAAACTGGTGCTGGGCGCGCGCCGCGGCGCCATATTGGCCTCATTGGTGGATGAGATCATCACTCAAG GCGGTGAAGCGATTTATCTGGCCGGCGATGTGACCGACGAGGTGTATGCCAGTGATTTAGTGGCGCTTGCCGTCGAGCAG TATGGTGGATTGGATATCGCCTTTAATAATGTCGGCATTAATGGTGAGTTAGGCGTGGATTCGGATGCGCTCAGCCGAGC CGAATGGGAAAACACCCTTACAACTAACCTTACCAGTGCATTTTTAGCGGCAAAATATCAATTACCACAAATGCTTAAAC GTGGCGCAGGGTCGATTATTTTTACATCTTCCTTTGTTGGCTATACCATAGGCTTTCCGCAAACGGCGGCCTATGCGGCG AGTAAAGCGGGGATGATTGGCTTAACCCAATCCTTGGCCGTTGAGTACGGTGCGCGCGGGATTAGGGTCAATGCGCTCTT GCCAGGCGGCACAGATACACCCATGGGGCGGGAGTTTGCTAATACCCCGGAGGCCATGGCCTTTGTGAAGAATCTTCATG CCCTCAAGCGCCTCGCAGATCCCGCGGAAATCGCCCAATCGGCGCTATATCTTGCCTCCGATGCGGCCAGTTTTACCACA GGGATAGCCTTATTGGTCGATGGTGGTGTGTCCATCTGTAAAACCTAG
Upstream 100 bases:
>100_bases GAATGTAAAAGCGCAAGATTCGGGTCGAGTAACCTGCCCTAACCCTTCACTATGTCTCTATCGGCGCATATTGGCCGAGG CAATTAATGGAGACATATCT
Downstream 100 bases:
>100_bases GGAATGGATAACGATGACCCAAGATTACGAGCGAATTGCGCGTGCCATTGACTTTATTCGTCAGCATGTGGGTCATCAAC CCTCACTGGCCGAGATTGCG
Product: short chain dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 255; Mature: 254
Protein sequence:
>255_residues MAVLQGKVAIITGASSGIGYATAKRFAREGAKLVLGARRGAILASLVDEIITQGGEAIYLAGDVTDEVYASDLVALAVEQ YGGLDIAFNNVGINGELGVDSDALSRAEWENTLTTNLTSAFLAAKYQLPQMLKRGAGSIIFTSSFVGYTIGFPQTAAYAA SKAGMIGLTQSLAVEYGARGIRVNALLPGGTDTPMGREFANTPEAMAFVKNLHALKRLADPAEIAQSALYLASDAASFTT GIALLVDGGVSICKT
Sequences:
>Translated_255_residues MAVLQGKVAIITGASSGIGYATAKRFAREGAKLVLGARRGAILASLVDEIITQGGEAIYLAGDVTDEVYASDLVALAVEQ YGGLDIAFNNVGINGELGVDSDALSRAEWENTLTTNLTSAFLAAKYQLPQMLKRGAGSIIFTSSFVGYTIGFPQTAAYAA SKAGMIGLTQSLAVEYGARGIRVNALLPGGTDTPMGREFANTPEAMAFVKNLHALKRLADPAEIAQSALYLASDAASFTT GIALLVDGGVSICKT >Mature_254_residues AVLQGKVAIITGASSGIGYATAKRFAREGAKLVLGARRGAILASLVDEIITQGGEAIYLAGDVTDEVYASDLVALAVEQY GGLDIAFNNVGINGELGVDSDALSRAEWENTLTTNLTSAFLAAKYQLPQMLKRGAGSIIFTSSFVGYTIGFPQTAAYAAS KAGMIGLTQSLAVEYGARGIRVNALLPGGTDTPMGREFANTPEAMAFVKNLHALKRLADPAEIAQSALYLASDAASFTTG IALLVDGGVSICKT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=250, Percent_Identity=35.2, Blast_Score=140, Evalue=1e-33, Organism=Homo sapiens, GI5031737, Length=252, Percent_Identity=33.7301587301587, Blast_Score=119, Evalue=2e-27, Organism=Homo sapiens, GI19923817, Length=257, Percent_Identity=31.5175097276265, Blast_Score=118, Evalue=5e-27, Organism=Homo sapiens, GI126723191, Length=187, Percent_Identity=35.8288770053476, Blast_Score=110, Evalue=2e-24, Organism=Homo sapiens, GI126723750, Length=253, Percent_Identity=32.4110671936759, Blast_Score=107, Evalue=8e-24, Organism=Homo sapiens, GI66933014, Length=256, Percent_Identity=35.546875, Blast_Score=105, Evalue=4e-23, Organism=Homo sapiens, GI33667109, Length=193, Percent_Identity=36.7875647668394, Blast_Score=103, Evalue=2e-22, Organism=Homo sapiens, GI59889578, Length=205, Percent_Identity=33.1707317073171, Blast_Score=99, Evalue=3e-21, Organism=Homo sapiens, GI15277342, Length=260, Percent_Identity=32.3076923076923, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI10190704, Length=249, Percent_Identity=30.9236947791165, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI31542939, Length=247, Percent_Identity=31.1740890688259, Blast_Score=92, Evalue=3e-19, Organism=Homo sapiens, GI32455239, Length=186, Percent_Identity=34.9462365591398, Blast_Score=92, Evalue=6e-19, Organism=Homo sapiens, GI5031765, Length=186, Percent_Identity=34.9462365591398, Blast_Score=92, Evalue=6e-19, Organism=Homo sapiens, GI40254992, Length=249, Percent_Identity=29.3172690763052, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI224922801, Length=175, Percent_Identity=33.1428571428571, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI4504505, Length=250, Percent_Identity=29.2, Blast_Score=78, Evalue=6e-15, Organism=Homo sapiens, GI302344755, Length=111, Percent_Identity=36.036036036036, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI4758504, Length=273, Percent_Identity=29.3040293040293, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI20149619, Length=203, Percent_Identity=32.512315270936, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI7705925, Length=259, Percent_Identity=28.957528957529, Blast_Score=75, Evalue=4e-14, Organism=Homo sapiens, GI40254986, Length=196, Percent_Identity=31.1224489795918, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI4503301, Length=256, Percent_Identity=28.125, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI226371731, Length=194, Percent_Identity=30.9278350515464, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI109715829, Length=253, Percent_Identity=26.4822134387352, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI7706318, Length=192, Percent_Identity=29.6875, Blast_Score=66, Evalue=2e-11, Organism=Escherichia coli, GI87082100, Length=261, Percent_Identity=38.3141762452107, Blast_Score=151, Evalue=4e-38, Organism=Escherichia coli, GI1787335, Length=250, Percent_Identity=36.8, Blast_Score=124, Evalue=7e-30, Organism=Escherichia coli, GI1787905, Length=246, Percent_Identity=33.3333333333333, Blast_Score=107, Evalue=5e-25, Organism=Escherichia coli, GI87082160, Length=252, Percent_Identity=31.7460317460317, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1789378, Length=255, Percent_Identity=32.9411764705882, Blast_Score=100, Evalue=7e-23, Organism=Escherichia coli, GI1790717, Length=249, Percent_Identity=27.710843373494, Blast_Score=98, Evalue=5e-22, Organism=Escherichia coli, GI2367175, Length=250, Percent_Identity=34.8, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1786812, Length=260, Percent_Identity=32.3076923076923, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1788459, Length=256, Percent_Identity=29.6875, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1787526, Length=246, Percent_Identity=32.9268292682927, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1789208, Length=251, Percent_Identity=27.0916334661355, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI2367365, Length=257, Percent_Identity=32.6848249027237, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1786701, Length=197, Percent_Identity=32.994923857868, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI1787820, Length=196, Percent_Identity=28.0612244897959, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1787545, Length=256, Percent_Identity=25.78125, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1789057, Length=256, Percent_Identity=27.734375, Blast_Score=64, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17561402, Length=253, Percent_Identity=32.0158102766798, Blast_Score=123, Evalue=8e-29, Organism=Caenorhabditis elegans, GI17555706, Length=254, Percent_Identity=34.6456692913386, Blast_Score=121, Evalue=4e-28, Organism=Caenorhabditis elegans, GI17560676, Length=248, Percent_Identity=29.0322580645161, Blast_Score=119, Evalue=1e-27, Organism=Caenorhabditis elegans, GI25147288, Length=256, Percent_Identity=35.15625, Blast_Score=110, Evalue=9e-25, Organism=Caenorhabditis elegans, GI71994604, Length=252, Percent_Identity=33.7301587301587, Blast_Score=108, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17560220, Length=269, Percent_Identity=31.9702602230483, Blast_Score=107, Evalue=4e-24, Organism=Caenorhabditis elegans, GI17544670, Length=270, Percent_Identity=28.8888888888889, Blast_Score=107, Evalue=4e-24, Organism=Caenorhabditis elegans, GI193204405, Length=268, Percent_Identity=30.9701492537313, Blast_Score=104, Evalue=4e-23, Organism=Caenorhabditis elegans, GI17531453, Length=268, Percent_Identity=29.8507462686567, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17562908, Length=268, Percent_Identity=29.1044776119403, Blast_Score=98, Evalue=4e-21, Organism=Caenorhabditis elegans, GI115534694, Length=252, Percent_Identity=33.7301587301587, Blast_Score=97, Evalue=6e-21, Organism=Caenorhabditis elegans, GI17559104, Length=262, Percent_Identity=32.0610687022901, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17562906, Length=275, Percent_Identity=28.3636363636364, Blast_Score=94, Evalue=8e-20, Organism=Caenorhabditis elegans, GI71994600, Length=253, Percent_Identity=30.8300395256917, Blast_Score=94, Evalue=9e-20, Organism=Caenorhabditis elegans, GI17562910, Length=268, Percent_Identity=29.1044776119403, Blast_Score=91, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17560332, Length=270, Percent_Identity=28.8888888888889, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI17568967, Length=194, Percent_Identity=33.5051546391753, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17560150, Length=263, Percent_Identity=27.7566539923954, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17536025, Length=260, Percent_Identity=31.9230769230769, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17562904, Length=269, Percent_Identity=29.7397769516729, Blast_Score=84, Evalue=9e-17, Organism=Caenorhabditis elegans, GI17538480, Length=269, Percent_Identity=29.7397769516729, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17551412, Length=264, Percent_Identity=27.6515151515151, Blast_Score=80, Evalue=7e-16, Organism=Caenorhabditis elegans, GI17508651, Length=250, Percent_Identity=28, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17536651, Length=255, Percent_Identity=30.1960784313725, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17562990, Length=263, Percent_Identity=27.7566539923954, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17563726, Length=263, Percent_Identity=27.3764258555133, Blast_Score=78, Evalue=6e-15, Organism=Caenorhabditis elegans, GI72000259, Length=263, Percent_Identity=26.615969581749, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI71982365, Length=192, Percent_Identity=31.7708333333333, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17564282, Length=197, Percent_Identity=31.4720812182741, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17561272, Length=258, Percent_Identity=33.3333333333333, Blast_Score=70, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17538486, Length=201, Percent_Identity=30.8457711442786, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71997099, Length=271, Percent_Identity=26.9372693726937, Blast_Score=66, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=256, Percent_Identity=31.25, Blast_Score=89, Evalue=8e-19, Organism=Saccharomyces cerevisiae, GI6322861, Length=254, Percent_Identity=28.3464566929134, Blast_Score=76, Evalue=5e-15, Organism=Saccharomyces cerevisiae, GI6322067, Length=227, Percent_Identity=28.1938325991189, Blast_Score=64, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6322227, Length=231, Percent_Identity=29.004329004329, Blast_Score=63, Evalue=4e-11, Organism=Drosophila melanogaster, GI24644339, Length=250, Percent_Identity=36.4, Blast_Score=133, Evalue=1e-31, Organism=Drosophila melanogaster, GI28571526, Length=254, Percent_Identity=36.2204724409449, Blast_Score=127, Evalue=5e-30, Organism=Drosophila melanogaster, GI21357041, Length=254, Percent_Identity=34.6456692913386, Blast_Score=120, Evalue=6e-28, Organism=Drosophila melanogaster, GI23397609, Length=251, Percent_Identity=36.2549800796813, Blast_Score=120, Evalue=7e-28, Organism=Drosophila melanogaster, GI21355319, Length=253, Percent_Identity=30.4347826086957, Blast_Score=113, Evalue=1e-25, Organism=Drosophila melanogaster, GI24639444, Length=257, Percent_Identity=35.408560311284, Blast_Score=105, Evalue=4e-23, Organism=Drosophila melanogaster, GI24644337, Length=254, Percent_Identity=35.8267716535433, Blast_Score=103, Evalue=7e-23, Organism=Drosophila melanogaster, GI21358495, Length=197, Percent_Identity=33.502538071066, Blast_Score=91, Evalue=5e-19, Organism=Drosophila melanogaster, GI24643142, Length=256, Percent_Identity=31.25, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI18859837, Length=195, Percent_Identity=31.2820512820513, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI21357673, Length=193, Percent_Identity=32.1243523316062, Blast_Score=78, Evalue=6e-15, Organism=Drosophila melanogaster, GI17737361, Length=245, Percent_Identity=29.7959183673469, Blast_Score=78, Evalue=7e-15, Organism=Drosophila melanogaster, GI28574402, Length=196, Percent_Identity=31.6326530612245, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24584744, Length=196, Percent_Identity=31.6326530612245, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI24640442, Length=212, Percent_Identity=32.5471698113208, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI24584748, Length=200, Percent_Identity=30.5, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI161076933, Length=200, Percent_Identity=30.5, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI281364494, Length=243, Percent_Identity=27.5720164609054, Blast_Score=69, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.47 [H]
Molecular weight: Translated: 26363; Mature: 26232
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVLQGKVAIITGASSGIGYATAKRFAREGAKLVLGARRGAILASLVDEIITQGGEAIYL CCEECCCEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEE AGDVTDEVYASDLVALAVEQYGGLDIAFNNVGINGELGVDSDALSRAEWENTLTTNLTSA ECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH FLAAKYQLPQMLKRGAGSIIFTSSFVGYTIGFPQTAAYAASKAGMIGLTQSLAVEYGARG HHHHHHHHHHHHHCCCCCEEEECCCCEEECCCCCHHHHHHHCCCCHHHHHHHHHHHCCCC IRVNALLPGGTDTPMGREFANTPEAMAFVKNLHALKRLADPAEIAQSALYLASDAASFTT EEEEEEECCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCHHHHHH GIALLVDGGVSICKT CEEEEEECCHHHCCC >Mature Secondary Structure AVLQGKVAIITGASSGIGYATAKRFAREGAKLVLGARRGAILASLVDEIITQGGEAIYL CEECCCEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEE AGDVTDEVYASDLVALAVEQYGGLDIAFNNVGINGELGVDSDALSRAEWENTLTTNLTSA ECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH FLAAKYQLPQMLKRGAGSIIFTSSFVGYTIGFPQTAAYAASKAGMIGLTQSLAVEYGARG HHHHHHHHHHHHHCCCCCEEEECCCCEEECCCCCHHHHHHHCCCCHHHHHHHHHHHCCCC IRVNALLPGGTDTPMGREFANTPEAMAFVKNLHALKRLADPAEIAQSALYLASDAASFTT EEEEEEECCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCHHHHHH GIALLVDGGVSICKT CEEEEEECCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 6420184; 3134196; 6413208; 6432532 [H]