Click here to switch to the map view.

The map label for this gene is 117921117

Identifier: 117921117

GI number: 117921117

Start: 3198135

End: 3200087

Strand: Direct

Name: 117921117

Synonym: Shewana3_2676

Alternate gene names: NA

Gene position: 3198135-3200087 (Clockwise)

Preceding gene: 117921116

Following gene: 117921118

Centisome position: 64.32

GC content: 48.64

Gene sequence:

>1953_bases
ATGATGAACGTACAAAAATCAAAATTCGCACTGCTGCTCGCAGCAAGTGCCGTCACTATGGCCTTAACTGGCTGTGGTGG
AAGCGATGGTAATGATGGTAAACCCGGTGAGCCAGGTGGCGAGCCAGCTCCCGCTATTCAAAAACTCAATTTTACCTTTA
ACAAATCAGTAGTGACTAACGGTGTTCCTAGTGTTGAATTCACCGTCACCAACGAAGACGATTTGCCCGTAGTTGGCCTG
CAAAAAATGCGCTTTGCTGCTGCTCAGCTGATTCCTCAAGGTGCAACAGGTGCTGGTAATGCCTCTCAATGGCAATACTT
TGGTGATGAAACCTGCGATGTGGCATCAACCTGTCCTGGTACCTTCGTGGACATGAAGAACGGCCACTACAGCTACACCT
TCAAGATGAATCTCACTGCCAACGCTAAGATCACCTATAACGACCAACTGGCGCAACGTGTTCTGATCCGCGCTTACAAC
ACGCCATTACCAGACGGCACACAAGTCCCTAACAGCAACGCTTATGTTGATTTTACCGCTGACACTGGTGCAACACCGGG
TTACAGCCGTAAAGTCGTCGCCACAGAAAGCTGTAATGCTTGTCACCAAGACTTAGCCAATGTGAAACACGGCGGCGCTT
ACTCAGATGTTAACTACTGCGCGACTTGCCATACTTCTGGCAAAGTGGGTGTAGGTAAAGAATTTAACGTGTTAGTCCAC
GCTAAACATAAAGACCTCACCTTAGGTTCGTTAGAAAGCTGCCAAAGCTGTCACGTTGAAACCGAAGCCGCACCTGATTG
GGGCAACTGGTCACGTATCCCAACTGCCGCCACCTGTGGCAGCTGCCATACAGCCGTTGATTTTGCCGCAGGCAAAGGCC
ACTCTCAGCAGTTAGATAACTCTAACTGTATCGCTTGTCACAACAGCAATTGGACTGCCGAGTTACACACAGGCAAAACC
GCTGAGAAGAAAGCGGTTATGGCTCAGTTAGGTATGTCTGCCACACTCGCGGGTCAAGAAGACAATACTGCGGTATTAAC
CGTATCTATCTTAGATAAAGACGGTAATGCCATCGATGCAGCAAGCGTACAAGATAAGATCAAACGTTTAGAAACGATCA
CTAACGTCGGTCCTAACTTCCCGATCATGGGCTACAACAAGAGCCCAGGTAGCGGTGCTGCTAAGATAGCCAAAGACCTC
GTTAAAGATGGTGCACTGCAAGATGGTGTGACCTTAGTTGACGGTAAACTGGTATTCACCACTCCTGCACTGCCATTTGG
TGCTGGCGATACTGATACCGCCTTTACCTTTATCGGTCTAGAAATGTGTAACACTGGCACCACGCTGACAGCTTGTACTG
CAGATAGCACAACCACCAGCATGAAAGCCGACTTAGTCTTCGGTACTAAATCAGGCAATGCACCCAGCATGCGCCATGTG
AACTCAGTGAACTTCAGCACTTGTCAAAACTGTCACAGTGATACCTTCGAGCTACACAAAGGTCACCACTCAGGCTTTGT
GATGACAGAACAAGTTTCACATGCCAAAGACGCAAGCGGTAAACCAATCGTCGGTGTGGATGCCTGTGTGGCCTGTCATA
CCCCAGATGGTACCTATGCTAGCGGTGCAAACAAAGGTGGTTTCGAAATGAAACTGCACGTAGTTCACGGTGAGCAAGGC
GTTATCAAAGAATGTACTCAGTGCCACAACGACTTCAACTTAGACGCGTTCAAAGTGAAGGGTGCACTGGCCACTTCTGC
TGGTAAATACACCACGCCAATCACAGCAACTTGTACTTCATGCCACGCGCCAGAATCTATTGGCCACGGCTTAGAAAATA
TGGGCGCGATTGTGAACGGTGATTATGTTCAAGCCAACCAAGCGGCACAGTCAGAAACCTGTTTCTACTGCCATACCCCA
ACAGTTGCAGATCACACTCAAGTGAAAATGTAA

Upstream 100 bases:

>100_bases
CATCCACTTAAGTTGCCTTCGAGACCAAAGCACAGACAAAGAATCTGTCGGGCGCAGGAGATAAGCAGTTAAGTAATGCC
AAACCTATGCAGGGAAAAAA

Downstream 100 bases:

>100_bases
TTTGCCCAAGCAGGGGGAGTTCGCTCCCCCTTTCTTGAATTTTGTTGGGACAAATTGGGAAGCCTATTATGAAGAACAGC
CACAAAATGAAAAACCTACT

Product: decaheme cytochrome c

Products: NA

Alternate protein names: Decaheme Cytochrome C MtrF; Decaheme C-Type Cytochrome OmcA/MtrC Family; Decaheme Cytochrome C-Like Protein

Number of amino acids: Translated: 650; Mature: 650

Protein sequence:

>650_residues
MMNVQKSKFALLLAASAVTMALTGCGGSDGNDGKPGEPGGEPAPAIQKLNFTFNKSVVTNGVPSVEFTVTNEDDLPVVGL
QKMRFAAAQLIPQGATGAGNASQWQYFGDETCDVASTCPGTFVDMKNGHYSYTFKMNLTANAKITYNDQLAQRVLIRAYN
TPLPDGTQVPNSNAYVDFTADTGATPGYSRKVVATESCNACHQDLANVKHGGAYSDVNYCATCHTSGKVGVGKEFNVLVH
AKHKDLTLGSLESCQSCHVETEAAPDWGNWSRIPTAATCGSCHTAVDFAAGKGHSQQLDNSNCIACHNSNWTAELHTGKT
AEKKAVMAQLGMSATLAGQEDNTAVLTVSILDKDGNAIDAASVQDKIKRLETITNVGPNFPIMGYNKSPGSGAAKIAKDL
VKDGALQDGVTLVDGKLVFTTPALPFGAGDTDTAFTFIGLEMCNTGTTLTACTADSTTTSMKADLVFGTKSGNAPSMRHV
NSVNFSTCQNCHSDTFELHKGHHSGFVMTEQVSHAKDASGKPIVGVDACVACHTPDGTYASGANKGGFEMKLHVVHGEQG
VIKECTQCHNDFNLDAFKVKGALATSAGKYTTPITATCTSCHAPESIGHGLENMGAIVNGDYVQANQAAQSETCFYCHTP
TVADHTQVKM

Sequences:

>Translated_650_residues
MMNVQKSKFALLLAASAVTMALTGCGGSDGNDGKPGEPGGEPAPAIQKLNFTFNKSVVTNGVPSVEFTVTNEDDLPVVGL
QKMRFAAAQLIPQGATGAGNASQWQYFGDETCDVASTCPGTFVDMKNGHYSYTFKMNLTANAKITYNDQLAQRVLIRAYN
TPLPDGTQVPNSNAYVDFTADTGATPGYSRKVVATESCNACHQDLANVKHGGAYSDVNYCATCHTSGKVGVGKEFNVLVH
AKHKDLTLGSLESCQSCHVETEAAPDWGNWSRIPTAATCGSCHTAVDFAAGKGHSQQLDNSNCIACHNSNWTAELHTGKT
AEKKAVMAQLGMSATLAGQEDNTAVLTVSILDKDGNAIDAASVQDKIKRLETITNVGPNFPIMGYNKSPGSGAAKIAKDL
VKDGALQDGVTLVDGKLVFTTPALPFGAGDTDTAFTFIGLEMCNTGTTLTACTADSTTTSMKADLVFGTKSGNAPSMRHV
NSVNFSTCQNCHSDTFELHKGHHSGFVMTEQVSHAKDASGKPIVGVDACVACHTPDGTYASGANKGGFEMKLHVVHGEQG
VIKECTQCHNDFNLDAFKVKGALATSAGKYTTPITATCTSCHAPESIGHGLENMGAIVNGDYVQANQAAQSETCFYCHTP
TVADHTQVKM
>Mature_650_residues
MMNVQKSKFALLLAASAVTMALTGCGGSDGNDGKPGEPGGEPAPAIQKLNFTFNKSVVTNGVPSVEFTVTNEDDLPVVGL
QKMRFAAAQLIPQGATGAGNASQWQYFGDETCDVASTCPGTFVDMKNGHYSYTFKMNLTANAKITYNDQLAQRVLIRAYN
TPLPDGTQVPNSNAYVDFTADTGATPGYSRKVVATESCNACHQDLANVKHGGAYSDVNYCATCHTSGKVGVGKEFNVLVH
AKHKDLTLGSLESCQSCHVETEAAPDWGNWSRIPTAATCGSCHTAVDFAAGKGHSQQLDNSNCIACHNSNWTAELHTGKT
AEKKAVMAQLGMSATLAGQEDNTAVLTVSILDKDGNAIDAASVQDKIKRLETITNVGPNFPIMGYNKSPGSGAAKIAKDL
VKDGALQDGVTLVDGKLVFTTPALPFGAGDTDTAFTFIGLEMCNTGTTLTACTADSTTTSMKADLVFGTKSGNAPSMRHV
NSVNFSTCQNCHSDTFELHKGHHSGFVMTEQVSHAKDASGKPIVGVDACVACHTPDGTYASGANKGGFEMKLHVVHGEQG
VIKECTQCHNDFNLDAFKVKGALATSAGKYTTPITATCTSCHAPESIGHGLENMGAIVNGDYVQANQAAQSETCFYCHTP
TVADHTQVKM

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 68280; Mature: 68280

Theoretical pI: Translated: 6.33; Mature: 6.33

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51008 MULTIHEME_CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNVQKSKFALLLAASAVTMALTGCGGSDGNDGKPGEPGGEPAPAIQKLNFTFNKSVVTN
CCCCCCHHEEEEEEHHEEEEEEECCCCCCCCCCCCCCCCCCCCCHHEEEEEEECCHHHCC
GVPSVEFTVTNEDDLPVVGLQKMRFAAAQLIPQGATGAGNASQWQYFGDETCDVASTCPG
CCCCEEEEEECCCCCCEECHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCHHHCCCC
TFVDMKNGHYSYTFKMNLTANAKITYNDQLAQRVLIRAYNTPLPDGTQVPNSNAYVDFTA
CEEECCCCEEEEEEEEEEEECCEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEC
DTGATPGYSRKVVATESCNACHQDLANVKHGGAYSDVNYCATCHTSGKVGVGKEFNVLVH
CCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEE
AKHKDLTLGSLESCQSCHVETEAAPDWGNWSRIPTAATCGSCHTAVDFAAGKGHSQQLDN
ECCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHEEECCCCCCCHHCCC
SNCIACHNSNWTAELHTGKTAEKKAVMAQLGMSATLAGQEDNTAVLTVSILDKDGNAIDA
CCEEEEECCCEEEEEECCCCHHHHHHHHHCCCCEEECCCCCCEEEEEEEEEECCCCEECH
ASVQDKIKRLETITNVGPNFPIMGYNKSPGSGAAKIAKDLVKDGALQDGVTLVDGKLVFT
HHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEECCEEEEE
TPALPFGAGDTDTAFTFIGLEMCNTGTTLTACTADSTTTSMKADLVFGTKSGNAPSMRHV
CCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEECCCCCCCEEEEEEEECCCCCCCCCCEE
NSVNFSTCQNCHSDTFELHKGHHSGFVMTEQVSHAKDASGKPIVGVDACVACHTPDGTYA
CCCCHHHHHCCCCCCHHHHCCCCCCEEEEHHHHHCCCCCCCCEEEECEEEEEECCCCCCC
SGANKGGFEMKLHVVHGEQGVIKECTQCHNDFNLDAFKVKGALATSAGKYTTPITATCTS
CCCCCCCEEEEEEEEECCCCHHHHHHHHCCCCCCEEEEECCEEECCCCCCCCCEEEEECC
CHAPESIGHGLENMGAIVNGDYVQANQAAQSETCFYCHTPTVADHTQVKM
CCCCHHHHCCHHHCCCEECCCEEECCCCCCCCEEEEEECCCCCCCCEECC
>Mature Secondary Structure
MMNVQKSKFALLLAASAVTMALTGCGGSDGNDGKPGEPGGEPAPAIQKLNFTFNKSVVTN
CCCCCCHHEEEEEEHHEEEEEEECCCCCCCCCCCCCCCCCCCCCHHEEEEEEECCHHHCC
GVPSVEFTVTNEDDLPVVGLQKMRFAAAQLIPQGATGAGNASQWQYFGDETCDVASTCPG
CCCCEEEEEECCCCCCEECHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCHHHCCCC
TFVDMKNGHYSYTFKMNLTANAKITYNDQLAQRVLIRAYNTPLPDGTQVPNSNAYVDFTA
CEEECCCCEEEEEEEEEEEECCEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEC
DTGATPGYSRKVVATESCNACHQDLANVKHGGAYSDVNYCATCHTSGKVGVGKEFNVLVH
CCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEE
AKHKDLTLGSLESCQSCHVETEAAPDWGNWSRIPTAATCGSCHTAVDFAAGKGHSQQLDN
ECCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHEEECCCCCCCHHCCC
SNCIACHNSNWTAELHTGKTAEKKAVMAQLGMSATLAGQEDNTAVLTVSILDKDGNAIDA
CCEEEEECCCEEEEEECCCCHHHHHHHHHCCCCEEECCCCCCEEEEEEEEEECCCCEECH
ASVQDKIKRLETITNVGPNFPIMGYNKSPGSGAAKIAKDLVKDGALQDGVTLVDGKLVFT
HHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEECCEEEEE
TPALPFGAGDTDTAFTFIGLEMCNTGTTLTACTADSTTTSMKADLVFGTKSGNAPSMRHV
CCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEECCCCCCCEEEEEEEECCCCCCCCCCEE
NSVNFSTCQNCHSDTFELHKGHHSGFVMTEQVSHAKDASGKPIVGVDACVACHTPDGTYA
CCCCHHHHHCCCCCCHHHHCCCCCCEEEEHHHHHCCCCCCCCEEEECEEEEEECCCCCCC
SGANKGGFEMKLHVVHGEQGVIKECTQCHNDFNLDAFKVKGALATSAGKYTTPITATCTS
CCCCCCCEEEEEEEEECCCCHHHHHHHHCCCCCCEEEEECCEEECCCCCCCCCEEEEECC
CHAPESIGHGLENMGAIVNGDYVQANQAAQSETCFYCHTPTVADHTQVKM
CCCCHHHHCCHHHCCCEECCCEEECCCCCCCCEEEEEECCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA