| Definition | Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008577 |
| Length | 4,972,204 |
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The map label for this gene is dinG [H]
Identifier: 117921071
GI number: 117921071
Start: 3138875
End: 3140947
Strand: Direct
Name: dinG [H]
Synonym: Shewana3_2630
Alternate gene names: 117921071
Gene position: 3138875-3140947 (Clockwise)
Preceding gene: 117921061
Following gene: 117921072
Centisome position: 63.13
GC content: 50.46
Gene sequence:
>2073_bases ATGTTACCTGACAACGTAAAAAACCAGATCCGCGCTATCTATAAAGATATTGCCGCCGCTTTGCCTAATTTTAGGCCACG CCGCGAGCAAAATTTTATGGTGGCAGAAATCTCTAAGACCCTAGCTGGCGACTATGACAAAGATAGACGCATCATAGTGG TCGAAGCGGGTACGGGGATTGGTAAATCATTGTCTTATATCTTGGGCACTATTCCGCTTGCACTCGCGAGTAAGAAAAAG GTCTGTATCGCCACGGCGACCGTGGCACTGCAGGAGCAGTTACTGCACAAAGACTTACCGTTTTTTCTCGAACAGTCAGG GTTAAACTTTCGCTTTGGTCTGGTAAAAGGACGCCAGCGTTATGTCTGTTTATCTAAACTTGCCATGCTGATCGGCGATG ATAACAGTACCCAAATGGCCATGTGGCAAACAAAGCCGGATAACAGCCAAATTGCCATGCTGCAGGAGCTACTCAGCGAC TATAATGAAGGCCGCTGGAATGGTGAAATCGATACGCTATCGACACCGATACCGGACCATCTCTGGCAGCAAATCGCCTG CGATAAACACAGTTGTCATCGGCAACTCGCCAGTCATCGTAATTGCCCGTTTCACAAGGCCCGCGAGGATGTGGATACCT GGGATGTACTGATCGCCAACCACAGTTTGCTGCTCGCCGACTTAGAGCTCGGTGGCGGGGTCATTTTACCCGATCCCGAA GACGTATTTTACGTCATTGACGAAGCCCACCACTTACCTATCGTCGCGCGGGACTTTTCTAGCGCACAGGCAACGCTTAG GGGAGCCGCCGACTGGCTCGAAAAAGTCGGGAAGACCAGCGCAAAATTACAAAATCAGATAAAGAGCAACAATATTATCG CCCCTGCGCAGGCGATGCAGGATCATATCGGTGACTTAATCGCTCAGCTCAATCAAGTCGCCCACTTTTGTGACACTCAA ACCAAACAGTTTGCCAATCCCGAGAGCCGCTATCGGTTCGAACACGGTAAATTGCCCGATGCACTAAAAATCCCAGCAGA GAATCTCGCGGCCACCTCCAATCTTGCCCTCAAGCAATTTAACAAGATGCAATTATTGCTGGCCGAGGCGATAAAAGATG GCGATATTCCTAAGCATCAAGCGGAAGCGCTACAGGCCGAAATGGGCTTTATGCTGCAGCGACTCGAAAACCTGCAAAAG CTCTGGAAAATGATGGCAAAGGAAGATTCCACGAAAGGCGCGCCCCTCGCCCGCTGGATTGAATTGCTCACGGGCAAACA GGTCGATTATCTGTTTAGCGCCTCGCCGATTGAAGTCGGGTTTATGCTTGAGTCTATGCTGTGGCAAAAGGCGGCTGGTG TCGTGCTATGTAGCGCAACGCTGCGGGCGCTGAATAACTTCGACCATTTCGCCCATCAGGTGGGATTATCGGTAAAGGAC GGCAGTCGTTATCTCGCCCTGCAATCCCCCTTCGATTATCCGAATAACGCCACGCTCTACTTACCTAAGATGAAAACCGA GCCGACGGACGATGCCTATACCGCTGAGCTTGCCGAACATATTTTGGAGCTGATTGAAGGCGAAATGGCCACCTTAGTAT TGTTTGCGTCTTACTGGCAAATGGAGAAAGTCGCCGAGCTGCTTGAGGGCAAACTCACGCAGGAAATTCTTATTCAAGGT AATGCCCCGCGCCAACAATTGCTTGAGACCCACAAAGCCAAGTGCGACAAAGGTGAGCCGAGTATCTTGTTCGGCACCGG CAGTTTTTCTGAAGGCTTAGACTTACCTGGGGATTACCTCACCAACCTCATCGTCACTAAACTGCCCTTTGCCGTGCCGA CGTCGCCCGTCGAGCAAGCCCATGCCGAGTATGTGAAAATAAAGGGCGGAAATCCGTTTCTGCAACTCACCATTCCAGAT GCATCGCGAAAGCTTATCCAAAGTTGTGGTAGATTACTGCGTAAAGAGCAGGATTACGGCCGAGTCACGATCCTAGATAG ACGATTAGTGACCAAACGTTACGGCAAATCCTTGCTAGACGCTCTGCCCCCCTTTAGACGAGTCATTGAGTAG
Upstream 100 bases:
>100_bases CGGGACACAGAATAAAATTGCCATAAAATGGCAGAAAAGTTTCTTAGGCTATGCAATCACTGTTATTATGTACAGCATTA ATTCGATAAAGTAGTGCCGC
Downstream 100 bases:
>100_bases GATTAAGATTTGGAGTTGTTACTCGAGCCCAGTAATTGGGCCCTGTTGGCTGTCATTGGCTTAATTGCAGGTTTTATCGA TGCAGTGGTCGGTGGTGGAG
Product: ATP-dependent DNA helicase DinG
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 690; Mature: 690
Protein sequence:
>690_residues MLPDNVKNQIRAIYKDIAAALPNFRPRREQNFMVAEISKTLAGDYDKDRRIIVVEAGTGIGKSLSYILGTIPLALASKKK VCIATATVALQEQLLHKDLPFFLEQSGLNFRFGLVKGRQRYVCLSKLAMLIGDDNSTQMAMWQTKPDNSQIAMLQELLSD YNEGRWNGEIDTLSTPIPDHLWQQIACDKHSCHRQLASHRNCPFHKAREDVDTWDVLIANHSLLLADLELGGGVILPDPE DVFYVIDEAHHLPIVARDFSSAQATLRGAADWLEKVGKTSAKLQNQIKSNNIIAPAQAMQDHIGDLIAQLNQVAHFCDTQ TKQFANPESRYRFEHGKLPDALKIPAENLAATSNLALKQFNKMQLLLAEAIKDGDIPKHQAEALQAEMGFMLQRLENLQK LWKMMAKEDSTKGAPLARWIELLTGKQVDYLFSASPIEVGFMLESMLWQKAAGVVLCSATLRALNNFDHFAHQVGLSVKD GSRYLALQSPFDYPNNATLYLPKMKTEPTDDAYTAELAEHILELIEGEMATLVLFASYWQMEKVAELLEGKLTQEILIQG NAPRQQLLETHKAKCDKGEPSILFGTGSFSEGLDLPGDYLTNLIVTKLPFAVPTSPVEQAHAEYVKIKGGNPFLQLTIPD ASRKLIQSCGRLLRKEQDYGRVTILDRRLVTKRYGKSLLDALPPFRRVIE
Sequences:
>Translated_690_residues MLPDNVKNQIRAIYKDIAAALPNFRPRREQNFMVAEISKTLAGDYDKDRRIIVVEAGTGIGKSLSYILGTIPLALASKKK VCIATATVALQEQLLHKDLPFFLEQSGLNFRFGLVKGRQRYVCLSKLAMLIGDDNSTQMAMWQTKPDNSQIAMLQELLSD YNEGRWNGEIDTLSTPIPDHLWQQIACDKHSCHRQLASHRNCPFHKAREDVDTWDVLIANHSLLLADLELGGGVILPDPE DVFYVIDEAHHLPIVARDFSSAQATLRGAADWLEKVGKTSAKLQNQIKSNNIIAPAQAMQDHIGDLIAQLNQVAHFCDTQ TKQFANPESRYRFEHGKLPDALKIPAENLAATSNLALKQFNKMQLLLAEAIKDGDIPKHQAEALQAEMGFMLQRLENLQK LWKMMAKEDSTKGAPLARWIELLTGKQVDYLFSASPIEVGFMLESMLWQKAAGVVLCSATLRALNNFDHFAHQVGLSVKD GSRYLALQSPFDYPNNATLYLPKMKTEPTDDAYTAELAEHILELIEGEMATLVLFASYWQMEKVAELLEGKLTQEILIQG NAPRQQLLETHKAKCDKGEPSILFGTGSFSEGLDLPGDYLTNLIVTKLPFAVPTSPVEQAHAEYVKIKGGNPFLQLTIPD ASRKLIQSCGRLLRKEQDYGRVTILDRRLVTKRYGKSLLDALPPFRRVIE >Mature_690_residues MLPDNVKNQIRAIYKDIAAALPNFRPRREQNFMVAEISKTLAGDYDKDRRIIVVEAGTGIGKSLSYILGTIPLALASKKK VCIATATVALQEQLLHKDLPFFLEQSGLNFRFGLVKGRQRYVCLSKLAMLIGDDNSTQMAMWQTKPDNSQIAMLQELLSD YNEGRWNGEIDTLSTPIPDHLWQQIACDKHSCHRQLASHRNCPFHKAREDVDTWDVLIANHSLLLADLELGGGVILPDPE DVFYVIDEAHHLPIVARDFSSAQATLRGAADWLEKVGKTSAKLQNQIKSNNIIAPAQAMQDHIGDLIAQLNQVAHFCDTQ TKQFANPESRYRFEHGKLPDALKIPAENLAATSNLALKQFNKMQLLLAEAIKDGDIPKHQAEALQAEMGFMLQRLENLQK LWKMMAKEDSTKGAPLARWIELLTGKQVDYLFSASPIEVGFMLESMLWQKAAGVVLCSATLRALNNFDHFAHQVGLSVKD GSRYLALQSPFDYPNNATLYLPKMKTEPTDDAYTAELAEHILELIEGEMATLVLFASYWQMEKVAELLEGKLTQEILIQG NAPRQQLLETHKAKCDKGEPSILFGTGSFSEGLDLPGDYLTNLIVTKLPFAVPTSPVEQAHAEYVKIKGGNPFLQLTIPD ASRKLIQSCGRLLRKEQDYGRVTILDRRLVTKRYGKSLLDALPPFRRVIE
Specific function: Probable helicase involved in DNA repair and perhaps also replication [H]
COG id: COG1199
COG function: function code KL; Rad3-related DNA helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1787018, Length=703, Percent_Identity=34.850640113798, Blast_Score=363, Evalue=1e-101, Organism=Escherichia coli, GI1788110, Length=260, Percent_Identity=31.5384615384615, Blast_Score=138, Evalue=1e-33, Organism=Saccharomyces cerevisiae, GI6321019, Length=720, Percent_Identity=20.5555555555556, Blast_Score=77, Evalue=1e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010614 - InterPro: IPR014013 - InterPro: IPR006555 - InterPro: IPR001650 [H]
Pfam domain/function: PF06733 DEAD_2 [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 77234; Mature: 77234
Theoretical pI: Translated: 6.79; Mature: 6.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLPDNVKNQIRAIYKDIAAALPNFRPRREQNFMVAEISKTLAGDYDKDRRIIVVEAGTGI CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCC GKSLSYILGTIPLALASKKKVCIATATVALQEQLLHKDLPFFLEQSGLNFRFGLVKGRQR CHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHCCCCHHHHCCCCCEEEEECCCCHH YVCLSKLAMLIGDDNSTQMAMWQTKPDNSQIAMLQELLSDYNEGRWNGEIDTLSTPIPDH HHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH LWQQIACDKHSCHRQLASHRNCPFHKAREDVDTWDVLIANHSLLLADLELGGGVILPDPE HHHHHHCCHHHHHHHHHHCCCCCCHHHHCCCCHHHHHEECCCEEEEEEECCCCEECCCCC DVFYVIDEAHHLPIVARDFSSAQATLRGAADWLEKVGKTSAKLQNQIKSNNIIAPAQAMQ CEEEEEECCCCCCEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHH DHIGDLIAQLNQVAHFCDTQTKQFANPESRYRFEHGKLPDALKIPAENLAATSNLALKQF HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCHHCCCHHHHHHHHHHHHHHH NKMQLLLAEAIKDGDIPKHQAEALQAEMGFMLQRLENLQKLWKMMAKEDSTKGAPLARWI HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH ELLTGKQVDYLFSASPIEVGFMLESMLWQKAAGVVLCSATLRALNNFDHFAHQVGLSVKD HHHCCCCCCEEECCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCEEEC GSRYLALQSPFDYPNNATLYLPKMKTEPTDDAYTAELAEHILELIEGEMATLVLFASYWQ CCEEEEEECCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH MEKVAELLEGKLTQEILIQGNAPRQQLLETHKAKCDKGEPSILFGTGSFSEGLDLPGDYL HHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHH TNLIVTKLPFAVPTSPVEQAHAEYVKIKGGNPFLQLTIPDASRKLIQSCGRLLRKEQDYG HHHHHHHCCCCCCCCHHHHHCCCEEEEECCCCEEEEEECHHHHHHHHHHHHHHHCCCCCC RVTILDRRLVTKRYGKSLLDALPPFRRVIE CEEEEHHHHHHHHHHHHHHHHCCHHHHHCC >Mature Secondary Structure MLPDNVKNQIRAIYKDIAAALPNFRPRREQNFMVAEISKTLAGDYDKDRRIIVVEAGTGI CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCC GKSLSYILGTIPLALASKKKVCIATATVALQEQLLHKDLPFFLEQSGLNFRFGLVKGRQR CHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHCCCCHHHHCCCCCEEEEECCCCHH YVCLSKLAMLIGDDNSTQMAMWQTKPDNSQIAMLQELLSDYNEGRWNGEIDTLSTPIPDH HHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH LWQQIACDKHSCHRQLASHRNCPFHKAREDVDTWDVLIANHSLLLADLELGGGVILPDPE HHHHHHCCHHHHHHHHHHCCCCCCHHHHCCCCHHHHHEECCCEEEEEEECCCCEECCCCC DVFYVIDEAHHLPIVARDFSSAQATLRGAADWLEKVGKTSAKLQNQIKSNNIIAPAQAMQ CEEEEEECCCCCCEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHH DHIGDLIAQLNQVAHFCDTQTKQFANPESRYRFEHGKLPDALKIPAENLAATSNLALKQF HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCHHCCCHHHHHHHHHHHHHHH NKMQLLLAEAIKDGDIPKHQAEALQAEMGFMLQRLENLQKLWKMMAKEDSTKGAPLARWI HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH ELLTGKQVDYLFSASPIEVGFMLESMLWQKAAGVVLCSATLRALNNFDHFAHQVGLSVKD HHHCCCCCCEEECCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCEEEC GSRYLALQSPFDYPNNATLYLPKMKTEPTDDAYTAELAEHILELIEGEMATLVLFASYWQ CCEEEEEECCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH MEKVAELLEGKLTQEILIQGNAPRQQLLETHKAKCDKGEPSILFGTGSFSEGLDLPGDYL HHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHH TNLIVTKLPFAVPTSPVEQAHAEYVKIKGGNPFLQLTIPDASRKLIQSCGRLLRKEQDYG HHHHHHHCCCCCCCCHHHHHCCCEEEEECCCCEEEEEECHHHHHHHHHHHHHHHCCCCCC RVTILDRRLVTKRYGKSLLDALPPFRRVIE CEEEEHHHHHHHHHHHHHHHHCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8396546; 8385320 [H]