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The map label for this gene is ompF [H]

Identifier: 117921069

GI number: 117921069

Start: 3134873

End: 3136081

Strand: Reverse

Name: ompF [H]

Synonym: Shewana3_2628

Alternate gene names: 117921069

Gene position: 3136081-3134873 (Counterclockwise)

Preceding gene: 117921070

Following gene: 117921068

Centisome position: 63.07

GC content: 43.92

Gene sequence:

>1209_bases
ATGAACAAAACGTTAGTAGCAACTGCGCTAGCAGCACTCTTTCTCGCCCCAACTGTATCTGCAATCGAAATCTACAAAGA
TGATAAAAATGCGGTAGAAATCGGTGGCTTTATCGATGCGCGTGTAATCAACACTCAAGGTGAAACTGAGGTTGTTAATG
GTGCTTCTCGAATTAATTTTGGTTTCAGCCGTGAGTTAACCCACGGTTGGAACGCCTTTGCTAAATTGGAATGGGGTGTG
AACCCTGTTGGCAGCAGCGATATTGTCTATAACAATCGCTTCGAATCTGTACAAGATGAGTTCTTCTATAACCGTTTAGG
TTACGCGGGCATTAGCCACGATGAGTACGGCACTATCACTATTGGTAAGCAATGGGGTGCTTGGTATGACGTGGTTTACA
ACACCAACTACGGTTTTGTATGGGATGGTAACGCGGCTGGTGTTTACACTTTTAACAAAGACGACGGTGCAGTAAACGGC
GTCGGTCGTGGTGACAAAGTTGTTCAATACCGTAACAGCATTGGTGACGTGAGTTTTGCGGTTCAGGCGCAATTAAAAAA
CAGCAGCTTCTATACCTGTGATATCGAAAACATCACAGAAGAAGCCTGTGAAGTGGAATGGAACGCAGGTAAGAAAGAAG
CGCAACAAGTCACCTATGATTACACCTATGGCGGTTCTGTAACTTATAAAGCGGCAGATAAGCTAAGCTTGATGGTGGGT
ATTAACCGCGGTGAATTTGATATTGCCTATGGCAATGGCGACCAAAAAACTGCTGTTGATCTGATCTACGGCGTGGGCGC
AACTTGGGGCGACTTCGATAAAGATGGCTTATATGTAGCTGCCAACGTTCACAAAGAAGAAAACCATGATACCGATAACA
TTGGCCGCTTGATCAAAGATGCCTATGGTGTTGAAACTTTAGTTTCTTACAAGTTTGATAACGGTTTACGTCCATTTGTG
TCTTACAACATTCTGGATGCTGGTAAAGATTATGTTATTCAACCTAACTTTAACGCCGATCCTAATGATGTGTTCAAGCG
TCAGTTTGTAGTCGTAGGTTTACACTTTGTTTGGGATCCAAACACGGTTCTGTATGTTGAAGCACGTAAAGACTACAGCG
ACTTTACCAGCTCAGATCAAGCGCAAGAAGCCAGAATGTCATTGTCAGAAGACGACGGCATCGCCATTGGTATCCGCTAT
ACGCTTTAA

Upstream 100 bases:

>100_bases
GAGAGTGTAATGAAAATTTGCTACTCTCACCGGGAAATTGTAAGGAAATATAACAACGGAATGACGTTGATAAAACATAA
ACGAAAAGGTTAAGCACCAA

Downstream 100 bases:

>100_bases
GCCTCAGTTGTTTATCTAGAAACTAGATAACTAAAAATTAACAAAAAACGCCAGTCAGCAATGACTGGCGTTTCTTGTTT
TTACCGACGCTTCTCCAGTT

Product: porin

Products: NA

Alternate protein names: Outer membrane protein opnP; Porin ompF [H]

Number of amino acids: Translated: 402; Mature: 402

Protein sequence:

>402_residues
MNKTLVATALAALFLAPTVSAIEIYKDDKNAVEIGGFIDARVINTQGETEVVNGASRINFGFSRELTHGWNAFAKLEWGV
NPVGSSDIVYNNRFESVQDEFFYNRLGYAGISHDEYGTITIGKQWGAWYDVVYNTNYGFVWDGNAAGVYTFNKDDGAVNG
VGRGDKVVQYRNSIGDVSFAVQAQLKNSSFYTCDIENITEEACEVEWNAGKKEAQQVTYDYTYGGSVTYKAADKLSLMVG
INRGEFDIAYGNGDQKTAVDLIYGVGATWGDFDKDGLYVAANVHKEENHDTDNIGRLIKDAYGVETLVSYKFDNGLRPFV
SYNILDAGKDYVIQPNFNADPNDVFKRQFVVVGLHFVWDPNTVLYVEARKDYSDFTSSDQAQEARMSLSEDDGIAIGIRY
TL

Sequences:

>Translated_402_residues
MNKTLVATALAALFLAPTVSAIEIYKDDKNAVEIGGFIDARVINTQGETEVVNGASRINFGFSRELTHGWNAFAKLEWGV
NPVGSSDIVYNNRFESVQDEFFYNRLGYAGISHDEYGTITIGKQWGAWYDVVYNTNYGFVWDGNAAGVYTFNKDDGAVNG
VGRGDKVVQYRNSIGDVSFAVQAQLKNSSFYTCDIENITEEACEVEWNAGKKEAQQVTYDYTYGGSVTYKAADKLSLMVG
INRGEFDIAYGNGDQKTAVDLIYGVGATWGDFDKDGLYVAANVHKEENHDTDNIGRLIKDAYGVETLVSYKFDNGLRPFV
SYNILDAGKDYVIQPNFNADPNDVFKRQFVVVGLHFVWDPNTVLYVEARKDYSDFTSSDQAQEARMSLSEDDGIAIGIRY
TL
>Mature_402_residues
MNKTLVATALAALFLAPTVSAIEIYKDDKNAVEIGGFIDARVINTQGETEVVNGASRINFGFSRELTHGWNAFAKLEWGV
NPVGSSDIVYNNRFESVQDEFFYNRLGYAGISHDEYGTITIGKQWGAWYDVVYNTNYGFVWDGNAAGVYTFNKDDGAVNG
VGRGDKVVQYRNSIGDVSFAVQAQLKNSSFYTCDIENITEEACEVEWNAGKKEAQQVTYDYTYGGSVTYKAADKLSLMVG
INRGEFDIAYGNGDQKTAVDLIYGVGATWGDFDKDGLYVAANVHKEENHDTDNIGRLIKDAYGVETLVSYKFDNGLRPFV
SYNILDAGKDYVIQPNFNADPNDVFKRQFVVVGLHFVWDPNTVLYVEARKDYSDFTSSDQAQEARMSLSEDDGIAIGIRY
TL

Specific function: OmpF is a porin that forms passive diffusion pores which allow small molecular weight hydrophilic materials across the outer membrane. It is also a receptor for the bacteriophage T2 [H]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR013793
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 44665; Mature: 44665

Theoretical pI: Translated: 4.32; Mature: 4.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKTLVATALAALFLAPTVSAIEIYKDDKNAVEIGGFIDARVINTQGETEVVNGASRINF
CCCHHHHHHHHHHHHHCCCEEEEEEECCCCEEEECCEEEEEEECCCCCEEEECCCHHCCC
GFSRELTHGWNAFAKLEWGVNPVGSSDIVYNNRFESVQDEFFYNRLGYAGISHDEYGTIT
CCCCCCCCCCCEEEEEECCCCCCCCCCEEECCCHHHHHHHHHHHHHCCCCCCCCCCEEEE
IGKQWGAWYDVVYNTNYGFVWDGNAAGVYTFNKDDGAVNGVGRGDKVVQYRNSIGDVSFA
ECCCCCCEEEEEEECCCCEEECCCCEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCEEEE
VQAQLKNSSFYTCDIENITEEACEVEWNAGKKEAQQVTYDYTYGGSVTYKAADKLSLMVG
EEEEECCCCEEEEEHHHHHHHHHEEEECCCCCHHHEEEEEEEECCEEEEECCCEEEEEEE
INRGEFDIAYGNGDQKTAVDLIYGVGATWGDFDKDGLYVAANVHKEENHDTDNIGRLIKD
CCCCCEEEEECCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHH
AYGVETLVSYKFDNGLRPFVSYNILDAGKDYVIQPNFNADPNDVFKRQFVVVGLHFVWDP
HCCHHEEEEEECCCCCCCCEEEEEEECCCCEEECCCCCCCHHHHHHEEEEEEEEEEEECC
NTVLYVEARKDYSDFTSSDQAQEARMSLSEDDGIAIGIRYTL
CEEEEEEECCCCCCCCCCCHHHHHHCCCCCCCCEEEEEEEEC
>Mature Secondary Structure
MNKTLVATALAALFLAPTVSAIEIYKDDKNAVEIGGFIDARVINTQGETEVVNGASRINF
CCCHHHHHHHHHHHHHCCCEEEEEEECCCCEEEECCEEEEEEECCCCCEEEECCCHHCCC
GFSRELTHGWNAFAKLEWGVNPVGSSDIVYNNRFESVQDEFFYNRLGYAGISHDEYGTIT
CCCCCCCCCCCEEEEEECCCCCCCCCCEEECCCHHHHHHHHHHHHHCCCCCCCCCCEEEE
IGKQWGAWYDVVYNTNYGFVWDGNAAGVYTFNKDDGAVNGVGRGDKVVQYRNSIGDVSFA
ECCCCCCEEEEEEECCCCEEECCCCEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCEEEE
VQAQLKNSSFYTCDIENITEEACEVEWNAGKKEAQQVTYDYTYGGSVTYKAADKLSLMVG
EEEEECCCCEEEEEHHHHHHHHHEEEECCCCCHHHEEEEEEEECCEEEEECCCEEEEEEE
INRGEFDIAYGNGDQKTAVDLIYGVGATWGDFDKDGLYVAANVHKEENHDTDNIGRLIKD
CCCCCEEEEECCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHH
AYGVETLVSYKFDNGLRPFVSYNILDAGKDYVIQPNFNADPNDVFKRQFVVVGLHFVWDP
HCCHHEEEEEECCCCCCCCEEEEEEECCCCEEECCCCCCCHHHHHHEEEEEEEEEEEECC
NTVLYVEARKDYSDFTSSDQAQEARMSLSEDDGIAIGIRYTL
CEEEEEEECCCCCCCCCCCHHHHHHCCCCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8817498 [H]