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The map label for this gene is rssA [H]

Identifier: 117921046

GI number: 117921046

Start: 3109370

End: 3110317

Strand: Reverse

Name: rssA [H]

Synonym: Shewana3_2605

Alternate gene names: 117921046

Gene position: 3110317-3109370 (Counterclockwise)

Preceding gene: 117921051

Following gene: 117921045

Centisome position: 62.55

GC content: 55.27

Gene sequence:

>948_bases
ATGGGCAAGGGAACAAAACCCACCATTGGCATCGCTCTTGGAAGCGGAGCCGCCAAGGGCTGGGCTCACATCGGTGTACT
CAATGGCCTTGCCGCCATGGGAGTCAAACCCGATAAAGTGGCCGGATGTTCAATCGGCGCGCTCGTCGGGGCGGCCTATG
CCCATAATCATTTGACTGAGCTTGAGGAATGGGTGCGCAGTTTTTCGAGCTGGGATGTCCTCGGGTTAATGGATATTCGT
TGGCGTAAGGGCGGTTTGATCGGCGGTGAGAAAGTCTTCGATGTGCTGCAATCGCGCATCGGTGATATCAATATTGAAGA
CTTAGAGCGACCCTTTGCAGCAATCGCGACGGACTTGTATTCGGGGCAAGAAATCTGGTTTCGCCATGGCGATTTACGCC
AAGCTGTGCGCGCCTCTTGCTCAATGCCGGGAATATTAGCCCCCGTTCGTCAAGGAGACCGTTGGTTAGTCGATGGCGCT
GTGGTGAACCCTGTGCCTGTGTCAGTGAGCCGCGCGATGGGCGTCGATATTGTGATTGCCGTGGATTTGCATGGGTTTCA
TTCTGGGCGGCTGCAAGTATTGCCCGTCAATATGACCAGCCATAAGGCGCCGAAGGAAGAAACCGAAATGCCCGCGCGCC
AAGAAACTGGCTTTATGGATTTATTTGCTAGGGGGCGGGAGTATGTCAGCAGTTTAACCGACAAGTTCTCCCTCGGCACT
AAATCCAACCCCGGCATGATTGCGGTGATGTCTCAATCGATGGGGATTTTAGAGCAGCGCCATAAACGGGCGCGTTTGAT
GGGAGATCCGCCCGATGTCTTGGTTGTGCCCGAAGTCGCCAATATCGGCACCATGGAATTTCACCGCGCCGATGAGGCCA
TAGCGGCGGGGGAGGCGGCTGTCGCTAAAGTGGCGCACTTGATTGAAGCCGCGATCTGGAAAGGCTAA

Upstream 100 bases:

>100_bases
CCCATTACCGAGTTAACGAATAATCATGCATTAATCATTGACAGTGTTCAGAACGGAACTTAGCTTATTCAAATCATAGA
GTTGTTAAGGGAAATATATT

Downstream 100 bases:

>100_bases
GTCGCGAGGATACTTAGGGCGTGTTGACGTTTCGAGATTAGATTTTGTTCGTTCTGGCAAGCTCGTGCTCGCGAAACGAA
TAATAATTTAGGCAAGTGAC

Product: patatin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 314

Protein sequence:

>315_residues
MGKGTKPTIGIALGSGAAKGWAHIGVLNGLAAMGVKPDKVAGCSIGALVGAAYAHNHLTELEEWVRSFSSWDVLGLMDIR
WRKGGLIGGEKVFDVLQSRIGDINIEDLERPFAAIATDLYSGQEIWFRHGDLRQAVRASCSMPGILAPVRQGDRWLVDGA
VVNPVPVSVSRAMGVDIVIAVDLHGFHSGRLQVLPVNMTSHKAPKEETEMPARQETGFMDLFARGREYVSSLTDKFSLGT
KSNPGMIAVMSQSMGILEQRHKRARLMGDPPDVLVVPEVANIGTMEFHRADEAIAAGEAAVAKVAHLIEAAIWKG

Sequences:

>Translated_315_residues
MGKGTKPTIGIALGSGAAKGWAHIGVLNGLAAMGVKPDKVAGCSIGALVGAAYAHNHLTELEEWVRSFSSWDVLGLMDIR
WRKGGLIGGEKVFDVLQSRIGDINIEDLERPFAAIATDLYSGQEIWFRHGDLRQAVRASCSMPGILAPVRQGDRWLVDGA
VVNPVPVSVSRAMGVDIVIAVDLHGFHSGRLQVLPVNMTSHKAPKEETEMPARQETGFMDLFARGREYVSSLTDKFSLGT
KSNPGMIAVMSQSMGILEQRHKRARLMGDPPDVLVVPEVANIGTMEFHRADEAIAAGEAAVAKVAHLIEAAIWKG
>Mature_314_residues
GKGTKPTIGIALGSGAAKGWAHIGVLNGLAAMGVKPDKVAGCSIGALVGAAYAHNHLTELEEWVRSFSSWDVLGLMDIRW
RKGGLIGGEKVFDVLQSRIGDINIEDLERPFAAIATDLYSGQEIWFRHGDLRQAVRASCSMPGILAPVRQGDRWLVDGAV
VNPVPVSVSRAMGVDIVIAVDLHGFHSGRLQVLPVNMTSHKAPKEETEMPARQETGFMDLFARGREYVSSLTDKFSLGTK
SNPGMIAVMSQSMGILEQRHKRARLMGDPPDVLVVPEVANIGTMEFHRADEAIAAGEAAVAKVAHLIEAAIWKG

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656041, Length=183, Percent_Identity=32.7868852459016, Blast_Score=95, Evalue=7e-20,
Organism=Homo sapiens, GI116256487, Length=183, Percent_Identity=32.7868852459016, Blast_Score=95, Evalue=7e-20,
Organism=Homo sapiens, GI260656037, Length=183, Percent_Identity=32.7868852459016, Blast_Score=95, Evalue=7e-20,
Organism=Homo sapiens, GI260656039, Length=183, Percent_Identity=32.7868852459016, Blast_Score=95, Evalue=7e-20,
Organism=Homo sapiens, GI260656043, Length=183, Percent_Identity=32.7868852459016, Blast_Score=95, Evalue=7e-20,
Organism=Homo sapiens, GI148727290, Length=182, Percent_Identity=33.5164835164835, Blast_Score=91, Evalue=9e-19,
Organism=Homo sapiens, GI148727335, Length=182, Percent_Identity=33.5164835164835, Blast_Score=91, Evalue=9e-19,
Organism=Escherichia coli, GI226510936, Length=299, Percent_Identity=48.494983277592, Blast_Score=289, Evalue=2e-79,
Organism=Caenorhabditis elegans, GI193204778, Length=164, Percent_Identity=32.3170731707317, Blast_Score=81, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI71997299, Length=170, Percent_Identity=32.9411764705882, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI71997289, Length=170, Percent_Identity=32.9411764705882, Blast_Score=68, Evalue=5e-12,
Organism=Saccharomyces cerevisiae, GI6323581, Length=295, Percent_Identity=25.0847457627119, Blast_Score=88, Evalue=2e-18,
Organism=Drosophila melanogaster, GI281376913, Length=187, Percent_Identity=33.1550802139037, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI28571388, Length=186, Percent_Identity=32.258064516129, Blast_Score=87, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 33833; Mature: 33702

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKGTKPTIGIALGSGAAKGWAHIGVLNGLAAMGVKPDKVAGCSIGALVGAAYAHNHLTE
CCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
LEEWVRSFSSWDVLGLMDIRWRKGGLIGGEKVFDVLQSRIGDINIEDLERPFAAIATDLY
HHHHHHHHCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
SGQEIWFRHGDLRQAVRASCSMPGILAPVRQGDRWLVDGAVVNPVPVSVSRAMGVDIVIA
CCCEEEEECCHHHHHHHHHCCCCCCCHHHCCCCEEEECCEEECCCCCCHHHHCCEEEEEE
VDLHGFHSGRLQVLPVNMTSHKAPKEETEMPARQETGFMDLFARGREYVSSLTDKFSLGT
EEECCCCCCCEEEEEECCCCCCCCCHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCC
KSNPGMIAVMSQSMGILEQRHKRARLMGDPPDVLVVPEVANIGTMEFHRADEAIAAGEAA
CCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCHHH
VAKVAHLIEAAIWKG
HHHHHHHHHHHHCCC
>Mature Secondary Structure 
GKGTKPTIGIALGSGAAKGWAHIGVLNGLAAMGVKPDKVAGCSIGALVGAAYAHNHLTE
CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
LEEWVRSFSSWDVLGLMDIRWRKGGLIGGEKVFDVLQSRIGDINIEDLERPFAAIATDLY
HHHHHHHHCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
SGQEIWFRHGDLRQAVRASCSMPGILAPVRQGDRWLVDGAVVNPVPVSVSRAMGVDIVIA
CCCEEEEECCHHHHHHHHHCCCCCCCHHHCCCCEEEECCEEECCCCCCHHHHCCEEEEEE
VDLHGFHSGRLQVLPVNMTSHKAPKEETEMPARQETGFMDLFARGREYVSSLTDKFSLGT
EEECCCCCCCEEEEEECCCCCCCCCHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCC
KSNPGMIAVMSQSMGILEQRHKRARLMGDPPDVLVVPEVANIGTMEFHRADEAIAAGEAA
CCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCHHH
VAKVAHLIEAAIWKG
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8282700; 9097039; 8905232; 9278503 [H]