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The map label for this gene is nrdD [H]

Identifier: 117921044

GI number: 117921044

Start: 3106023

End: 3108140

Strand: Reverse

Name: nrdD [H]

Synonym: Shewana3_2603

Alternate gene names: 117921044

Gene position: 3108140-3106023 (Counterclockwise)

Preceding gene: 117921045

Following gene: 117921043

Centisome position: 62.51

GC content: 49.2

Gene sequence:

>2118_bases
ATGCCAGTCGTGATCAAGCGGGATGGTTGCCGCACACCTTTTGATGAAACAAGGATAAGAGATGCAGTGATAGCGGCTGC
AAACTCGGTTGGGATAGAGGATGCAGACTATGCCGCGACGGTTGCCGCTTGTGTGAGGGAGCGAGTGGCCAATCTGGCAG
AAGTCGAGATCCACCATTTACAGGACGCAGTTGAAAACCTACTGATGGAAGGGCCTTACAAGTCCTTGGCGCGTGTCTAT
ATCGAGTATCGCCATGACAGAGATATTTGCCGCGATGCGACCAGTAAGCTCAATCTCGAAATCCGTGGTTTAGTCGAGCA
GAGCAATGCCGCGCTGTTAAATGAAAACGCCAATAAAGACTCTAAAGTGATCCCAACCCAACGGGATTTACTCGCGGGTA
TCGTCGCGAAGCATTACGCCAAGAGCCATATTCTGCCTAAGGATGTGGTGGCCGCCCATGAACTTGGTGAAATCCATTAC
CACGATCTCGATTATTCGCCGTTTTTCCCGATGTTTAACTGCATGTTGATTGATTTGGCGGGCATGTTGACCCACGGTTT
TAAGATGGGCAACGCCGAAATTGAAACCCCAAAATCCATCTCCACCGCTACGGCGGTAACAGCGCAGATCATTGCCCAAG
TGGCGAGCCATATTTATGGCGGCACCACGATTAACCGTATCGATGAAGTGCTCGCGCCATTTGTGGCGAAGAGCTATGAC
AAACACTATCAAGTGGCGCTCAACTGGCAGATTAAAGATGCCAAGGCCTATGCGACGGCGCTCACCGAAAAAGAATGCCA
TGATGCTTTTCAATCCCTTGAATATGAAGTGAATACCTTACATACCGCCAATGGGCAAACGCCCTTTGTGACCTTTGGTT
TTGGTCTTGGTACCTCGTGGGAGTCGCGTTTAATTCAGCAATCCATGCTGAAAGTGCGTATGACGGGCCTAGGTAAAAAT
CGTAAGACTGCTGTGTTCCCTAAGTTAGTGTTTGCGATTCGTGATGGCATTAACCACAAGGCTGGTGATTGCAACTACGA
TGTCAAACAAATGGCCCTAAAATGCGCCAGCATGCGCATGTATCCAGATATTTTGAACTACGAGCAAGTGGAAAAGGTCA
CGGGTTCATTTAAAACCCCTATGGGCTGTCGTAGCTTTTTAGGCTCCTATAAAGAAAATGGCGAACTGGTCCATGAAGGG
CGCAATAACCTTGGGGTGGTGAGCTTAAACTTGCCCCGTGTAGCCCTCGAGGCCAATGGCAATGAAGCTGAATTCTATCG
CATTTTAGATGAGCGTTTACTGCTTGCCCGCCGCGCATTAGACACCCGCATCGAACGCTTAAATGGCGTTAAAGCTAGAG
TTGCGCCGATTCTGTATATGGAAGGCGCCTGCGGTGTGCGCCTGCGCGCCGATGATGATATCGCCCAAATCTTTAAAAAT
GGTCGGGCATCGATTTCATTAGGCTATATCGGTTTGCATGAAACCATCAATGCGCTCTATGGCACTGAAACCCATGTATT
TGATGATGCCAAGCTTAGAGAAAAAGCGGTGGCGATTGTCGCGCACCTTAAAGCGGCTACCGATGCATGGAAGGCCGAAA
CCGGTTATGGGTTTAGCCTTTATAGCACCCCGAGTGAGAGCCTCTGCAGCCGTTTCTGCAAACTCGATGCGCGCCAATTC
GGCGTGGTTGCAGGCGTAACTGATAAGGGTTATTACACCAATAGCTTCCACTTGGATGTGGAAAAGCGGGTGAATCCTTA
CGATAAAATTGATTTTGAGCAACCCTATCCTGCGATCGCCAATGGCGGATTTATTTGCTACGGCGAATACCCCAATATGC
AGCACAACATTGAAGCGCTCGAAAATGTGTGGGATTACAGCTATAGCCGCGTGCCTTACTACGGCACTAACACGCCGATT
GATGAATGCTACGACTGCGGTTTTACCGGTGAGTTTAGTTGTACCAGTAAAGGCTTTACTTGTCCTAAATGTGGCAACCA
TGAGCCAAGCAGGGTATCTGTGACGCGTCGGGTATGCGGTTACTTAGGTAGCCCCGATGCCAGACCATTCAACCATGGCA
AGCAAGAAGAAGTGAAACGCAGGATCAAACACTTGTAA

Upstream 100 bases:

>100_bases
TAGGTGTTAATGCCGCCTAATTGCCTAGATATTGTGTTTTTTGACTATCTAAGCACTATATGTAGTGTTAATTTTAATCG
GAATGGAGAGGAACTGAACA

Downstream 100 bases:

>100_bases
CACTTTTGCCTTGTTTGTTTTGTTACACTGGCACAGTCGCACTGGTGGCGACTGTGCTTTGATCTTTAGCCCCTAACCAT
ATTGGGCTTTAGCGCGGACG

Product: anaerobic ribonucleoside triphosphate reductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 705; Mature: 704

Protein sequence:

>705_residues
MPVVIKRDGCRTPFDETRIRDAVIAAANSVGIEDADYAATVAACVRERVANLAEVEIHHLQDAVENLLMEGPYKSLARVY
IEYRHDRDICRDATSKLNLEIRGLVEQSNAALLNENANKDSKVIPTQRDLLAGIVAKHYAKSHILPKDVVAAHELGEIHY
HDLDYSPFFPMFNCMLIDLAGMLTHGFKMGNAEIETPKSISTATAVTAQIIAQVASHIYGGTTINRIDEVLAPFVAKSYD
KHYQVALNWQIKDAKAYATALTEKECHDAFQSLEYEVNTLHTANGQTPFVTFGFGLGTSWESRLIQQSMLKVRMTGLGKN
RKTAVFPKLVFAIRDGINHKAGDCNYDVKQMALKCASMRMYPDILNYEQVEKVTGSFKTPMGCRSFLGSYKENGELVHEG
RNNLGVVSLNLPRVALEANGNEAEFYRILDERLLLARRALDTRIERLNGVKARVAPILYMEGACGVRLRADDDIAQIFKN
GRASISLGYIGLHETINALYGTETHVFDDAKLREKAVAIVAHLKAATDAWKAETGYGFSLYSTPSESLCSRFCKLDARQF
GVVAGVTDKGYYTNSFHLDVEKRVNPYDKIDFEQPYPAIANGGFICYGEYPNMQHNIEALENVWDYSYSRVPYYGTNTPI
DECYDCGFTGEFSCTSKGFTCPKCGNHEPSRVSVTRRVCGYLGSPDARPFNHGKQEEVKRRIKHL

Sequences:

>Translated_705_residues
MPVVIKRDGCRTPFDETRIRDAVIAAANSVGIEDADYAATVAACVRERVANLAEVEIHHLQDAVENLLMEGPYKSLARVY
IEYRHDRDICRDATSKLNLEIRGLVEQSNAALLNENANKDSKVIPTQRDLLAGIVAKHYAKSHILPKDVVAAHELGEIHY
HDLDYSPFFPMFNCMLIDLAGMLTHGFKMGNAEIETPKSISTATAVTAQIIAQVASHIYGGTTINRIDEVLAPFVAKSYD
KHYQVALNWQIKDAKAYATALTEKECHDAFQSLEYEVNTLHTANGQTPFVTFGFGLGTSWESRLIQQSMLKVRMTGLGKN
RKTAVFPKLVFAIRDGINHKAGDCNYDVKQMALKCASMRMYPDILNYEQVEKVTGSFKTPMGCRSFLGSYKENGELVHEG
RNNLGVVSLNLPRVALEANGNEAEFYRILDERLLLARRALDTRIERLNGVKARVAPILYMEGACGVRLRADDDIAQIFKN
GRASISLGYIGLHETINALYGTETHVFDDAKLREKAVAIVAHLKAATDAWKAETGYGFSLYSTPSESLCSRFCKLDARQF
GVVAGVTDKGYYTNSFHLDVEKRVNPYDKIDFEQPYPAIANGGFICYGEYPNMQHNIEALENVWDYSYSRVPYYGTNTPI
DECYDCGFTGEFSCTSKGFTCPKCGNHEPSRVSVTRRVCGYLGSPDARPFNHGKQEEVKRRIKHL
>Mature_704_residues
PVVIKRDGCRTPFDETRIRDAVIAAANSVGIEDADYAATVAACVRERVANLAEVEIHHLQDAVENLLMEGPYKSLARVYI
EYRHDRDICRDATSKLNLEIRGLVEQSNAALLNENANKDSKVIPTQRDLLAGIVAKHYAKSHILPKDVVAAHELGEIHYH
DLDYSPFFPMFNCMLIDLAGMLTHGFKMGNAEIETPKSISTATAVTAQIIAQVASHIYGGTTINRIDEVLAPFVAKSYDK
HYQVALNWQIKDAKAYATALTEKECHDAFQSLEYEVNTLHTANGQTPFVTFGFGLGTSWESRLIQQSMLKVRMTGLGKNR
KTAVFPKLVFAIRDGINHKAGDCNYDVKQMALKCASMRMYPDILNYEQVEKVTGSFKTPMGCRSFLGSYKENGELVHEGR
NNLGVVSLNLPRVALEANGNEAEFYRILDERLLLARRALDTRIERLNGVKARVAPILYMEGACGVRLRADDDIAQIFKNG
RASISLGYIGLHETINALYGTETHVFDDAKLREKAVAIVAHLKAATDAWKAETGYGFSLYSTPSESLCSRFCKLDARQFG
VVAGVTDKGYYTNSFHLDVEKRVNPYDKIDFEQPYPAIANGGFICYGEYPNMQHNIEALENVWDYSYSRVPYYGTNTPID
ECYDCGFTGEFSCTSKGFTCPKCGNHEPSRVSVTRRVCGYLGSPDARPFNHGKQEEVKRRIKHL

Specific function: Unknown

COG id: COG1328

COG function: function code F; Oxygen-sensitive ribonucleoside-triphosphate reductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 glycine radical domain [H]

Homologues:

Organism=Escherichia coli, GI1790686, Length=705, Percent_Identity=78.2978723404255, Blast_Score=1183, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005144
- InterPro:   IPR001150
- InterPro:   IPR019777
- InterPro:   IPR012833 [H]

Pfam domain/function: PF03477 ATP-cone; PF01228 Gly_radical [H]

EC number: =1.17.4.2 [H]

Molecular weight: Translated: 78741; Mature: 78610

Theoretical pI: Translated: 7.00; Mature: 7.00

Prosite motif: PS51161 ATP_CONE ; PS00850 GLY_RADICAL_1 ; PS51149 GLY_RADICAL_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVVIKRDGCRTPFDETRIRDAVIAAANSVGIEDADYAATVAACVRERVANLAEVEIHHL
CCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
QDAVENLLMEGPYKSLARVYIEYRHDRDICRDATSKLNLEIRGLVEQSNAALLNENANKD
HHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHCCEEEEEEHCCCCCEEECCCCCCC
SKVIPTQRDLLAGIVAKHYAKSHILPKDVVAAHELGEIHYHDLDYSPFFPMFNCMLIDLA
CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHH
GMLTHGFKMGNAEIETPKSISTATAVTAQIIAQVASHIYGGTTINRIDEVLAPFVAKSYD
HHHHHCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
KHYQVALNWQIKDAKAYATALTEKECHDAFQSLEYEVNTLHTANGQTPFVTFGFGLGTSW
CCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCEEEEECCCCCCH
ESRLIQQSMLKVRMTGLGKNRKTAVFPKLVFAIRDGINHKAGDCNYDVKQMALKCASMRM
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
YPDILNYEQVEKVTGSFKTPMGCRSFLGSYKENGELVHEGRNNLGVVSLNLPRVALEANG
CHHHCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCEEECCCCCEEEEEECCCEEEEECCC
NEAEFYRILDERLLLARRALDTRIERLNGVKARVAPILYMEGACGVRLRADDDIAQIFKN
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCEEEEECCCCCEEEECCCHHHHHHHC
GRASISLGYIGLHETINALYGTETHVFDDAKLREKAVAIVAHLKAATDAWKAETGYGFSL
CCCEEEEEEEEHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
YSTPSESLCSRFCKLDARQFGVVAGVTDKGYYTNSFHLDVEKRVNPYDKIDFEQPYPAIA
ECCCHHHHHHHHHHCCHHHCCEEEEECCCCEEECEEEEEHHHHCCCCCCCCCCCCCCCCC
NGGFICYGEYPNMQHNIEALENVWDYSYSRVPYYGTNTPIDECYDCGFTGEFSCTSKGFT
CCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCC
CPKCGNHEPSRVSVTRRVCGYLGSPDARPFNHGKQEEVKRRIKHL
CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure 
PVVIKRDGCRTPFDETRIRDAVIAAANSVGIEDADYAATVAACVRERVANLAEVEIHHL
CEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
QDAVENLLMEGPYKSLARVYIEYRHDRDICRDATSKLNLEIRGLVEQSNAALLNENANKD
HHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHCCEEEEEEHCCCCCEEECCCCCCC
SKVIPTQRDLLAGIVAKHYAKSHILPKDVVAAHELGEIHYHDLDYSPFFPMFNCMLIDLA
CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHH
GMLTHGFKMGNAEIETPKSISTATAVTAQIIAQVASHIYGGTTINRIDEVLAPFVAKSYD
HHHHHCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
KHYQVALNWQIKDAKAYATALTEKECHDAFQSLEYEVNTLHTANGQTPFVTFGFGLGTSW
CCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCEEEEECCCCCCH
ESRLIQQSMLKVRMTGLGKNRKTAVFPKLVFAIRDGINHKAGDCNYDVKQMALKCASMRM
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
YPDILNYEQVEKVTGSFKTPMGCRSFLGSYKENGELVHEGRNNLGVVSLNLPRVALEANG
CHHHCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCEEECCCCCEEEEEECCCEEEEECCC
NEAEFYRILDERLLLARRALDTRIERLNGVKARVAPILYMEGACGVRLRADDDIAQIFKN
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCEEEEECCCCCEEEECCCHHHHHHHC
GRASISLGYIGLHETINALYGTETHVFDDAKLREKAVAIVAHLKAATDAWKAETGYGFSL
CCCEEEEEEEEHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
YSTPSESLCSRFCKLDARQFGVVAGVTDKGYYTNSFHLDVEKRVNPYDKIDFEQPYPAIA
ECCCHHHHHHHHHHCCHHHCCEEEEECCCCEEECEEEEEHHHHCCCCCCCCCCCCCCCCC
NGGFICYGEYPNMQHNIEALENVWDYSYSRVPYYGTNTPIDECYDCGFTGEFSCTSKGFT
CCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCC
CPKCGNHEPSRVSVTRRVCGYLGSPDARPFNHGKQEEVKRRIKHL
CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8421692; 7610040; 9278503; 8083158; 7852304 [H]