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The map label for this gene is yceD [H]

Identifier: 117921004

GI number: 117921004

Start: 3064372

End: 3064896

Strand: Reverse

Name: yceD [H]

Synonym: Shewana3_2563

Alternate gene names: 117921004

Gene position: 3064896-3064372 (Counterclockwise)

Preceding gene: 117921006

Following gene: 117921003

Centisome position: 61.64

GC content: 48.38

Gene sequence:

>525_bases
ATGCAAACAGTAAAGATACCGGTTTCAATTGATCCTTTTCGCGCCGCCTCGAGCCGTTCTACCTATGAGGGGATAGTGCC
TGGGCAGCAATTGAGAAGATTAAATGAGTTATGTGCCGGCGACTGTTCCGATGTGGCAGTGTCGATTGAATGTGGCGTAG
ATTTGCAGGGGATAGTCTACCTGAAAGGGAAGGCTGTGACGGAGCTCACTCTGGTTTGTCAACGTTGCATGACGCTATTT
ACCACTGAGGTTACGGTCGAGTTTTGCTTCGGTCCATGCCGGACTAAGGCAGAAATCGATGAGCTCCCGGATGCGTATGA
CCCAATTGAGTGCAATGAGATTGGCGAAGTACGTCTGCATCAATTGATCGAAGATGAATTGATAGTCGCTATGCCTATCA
TCCCGATGCATGAAGAAACTGATTGCAACACCGGGTCAATGGACATAGTTGTAGGCGAGATCGAACCCGCTCAAGAGGAG
CGTCCAAATCCGTTTGCAGTGTTAGAAAAACTGAAGAGCAAGTAA

Upstream 100 bases:

>100_bases
TCAATGTTGGGGCTAGAGAATCACTTAAGTCGCAAACTGGGACTTAAGTTAGAAATTTTTCTTTGACTCTAGCGTTTTCA
AACTATAATATGCGCGCCTT

Downstream 100 bases:

>100_bases
TCTAGGAGACAGGGCCAATGGCTGTACAACAGAATAAAAAATCTCGTTCTAAGCGCGGTATGCGCCGTTCACATGACGCA
CTGAGCACTGCTCAGCTGTC

Product: hypothetical protein

Products: NA

Alternate protein names: G30K [H]

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MQTVKIPVSIDPFRAASSRSTYEGIVPGQQLRRLNELCAGDCSDVAVSIECGVDLQGIVYLKGKAVTELTLVCQRCMTLF
TTEVTVEFCFGPCRTKAEIDELPDAYDPIECNEIGEVRLHQLIEDELIVAMPIIPMHEETDCNTGSMDIVVGEIEPAQEE
RPNPFAVLEKLKSK

Sequences:

>Translated_174_residues
MQTVKIPVSIDPFRAASSRSTYEGIVPGQQLRRLNELCAGDCSDVAVSIECGVDLQGIVYLKGKAVTELTLVCQRCMTLF
TTEVTVEFCFGPCRTKAEIDELPDAYDPIECNEIGEVRLHQLIEDELIVAMPIIPMHEETDCNTGSMDIVVGEIEPAQEE
RPNPFAVLEKLKSK
>Mature_174_residues
MQTVKIPVSIDPFRAASSRSTYEGIVPGQQLRRLNELCAGDCSDVAVSIECGVDLQGIVYLKGKAVTELTLVCQRCMTLF
TTEVTVEFCFGPCRTKAEIDELPDAYDPIECNEIGEVRLHQLIEDELIVAMPIIPMHEETDCNTGSMDIVVGEIEPAQEE
RPNPFAVLEKLKSK

Specific function: Unknown

COG id: COG1399

COG function: function code R; Predicted metal-binding, possibly nucleic acid-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0159 [H]

Homologues:

Organism=Escherichia coli, GI1787329, Length=174, Percent_Identity=42.5287356321839, Blast_Score=154, Evalue=3e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003772 [H]

Pfam domain/function: PF02620 DUF177 [H]

EC number: NA

Molecular weight: Translated: 19248; Mature: 19248

Theoretical pI: Translated: 4.16; Mature: 4.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
8.0 %Cys+Met (Translated Protein)
5.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
8.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTVKIPVSIDPFRAASSRSTYEGIVPGQQLRRLNELCAGDCSDVAVSIECGVDLQGIVY
CCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEE
LKGKAVTELTLVCQRCMTLFTTEVTVEFCFGPCRTKAEIDELPDAYDPIECNEIGEVRLH
ECCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHHCCCCCCCCCCCCHHHHHHH
QLIEDELIVAMPIIPMHEETDCNTGSMDIVVGEIEPAQEERPNPFAVLEKLKSK
HHHHCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCHHHCCCCHHHHHHHHHCC
>Mature Secondary Structure
MQTVKIPVSIDPFRAASSRSTYEGIVPGQQLRRLNELCAGDCSDVAVSIECGVDLQGIVY
CCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEE
LKGKAVTELTLVCQRCMTLFTTEVTVEFCFGPCRTKAEIDELPDAYDPIECNEIGEVRLH
ECCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHHCCCCCCCCCCCCHHHHHHH
QLIEDELIVAMPIIPMHEETDCNTGSMDIVVGEIEPAQEERPNPFAVLEKLKSK
HHHHCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCHHHCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]