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The map label for this gene is ybgC [H]

Identifier: 117920976

GI number: 117920976

Start: 3031005

End: 3031406

Strand: Reverse

Name: ybgC [H]

Synonym: Shewana3_2535

Alternate gene names: 117920976

Gene position: 3031406-3031005 (Counterclockwise)

Preceding gene: 117920977

Following gene: 117920975

Centisome position: 60.97

GC content: 46.27

Gene sequence:

>402_bases
ATGACGTTTAATTGGCCCATTTCAGTCTATTACGAAGACACCGACGCAGGCGGGGTTGTCTATCATTCGAACTATCTCAA
TTTTTTTGAGCGGGCGCGAACCGAGTGGTTAAGAGCCTTAGGCGTAAGCCAGACTGCACTGTTAGCCGATGATACGGCGT
TTGTGGTTAAGCGGGCGGAATTGGATTTTAAAAAAGCCGCGCGTTTTGAACAGAACCTTATTGTAGAAACTAAGGTCATA
GAGTTGAAAAAGGCCTCGTTGGTATTTCATCAACGTTTGGTTGATCATCAGGGAGACTGTTATTGTGAAGGTACAGTGCT
AGTGGCCTGTGTTGCCTTATCACGAATGCGGCCCCGAGCTATTCCCTTAAATATTGTGCAGGAGTTTGACAGTGCAAGCT
GA

Upstream 100 bases:

>100_bases
CCGCGCTATCCCTATCTATATCTTCGTCGGGTCATTCACAAGTCTTGTTTCCCTAGGTATAGTAAGCGTCAATTTTTCAA
CCAAAATTTGCTGATTTCAA

Downstream 100 bases:

>100_bases
TATGTCGATTGTTGGGTTATTTTTACAAGCCAGTTTATTAGTGAAATTTGTGATGTTCACTTTACTTTGCTTGTCTGTGA
TGTCTTGGACGGTGATTTTA

Product: 4-hydroxybenzoyl-CoA thioesterase

Products: NA

Alternate protein names: Acyl-CoA thioesterase [H]

Number of amino acids: Translated: 133; Mature: 132

Protein sequence:

>133_residues
MTFNWPISVYYEDTDAGGVVYHSNYLNFFERARTEWLRALGVSQTALLADDTAFVVKRAELDFKKAARFEQNLIVETKVI
ELKKASLVFHQRLVDHQGDCYCEGTVLVACVALSRMRPRAIPLNIVQEFDSAS

Sequences:

>Translated_133_residues
MTFNWPISVYYEDTDAGGVVYHSNYLNFFERARTEWLRALGVSQTALLADDTAFVVKRAELDFKKAARFEQNLIVETKVI
ELKKASLVFHQRLVDHQGDCYCEGTVLVACVALSRMRPRAIPLNIVQEFDSAS
>Mature_132_residues
TFNWPISVYYEDTDAGGVVYHSNYLNFFERARTEWLRALGVSQTALLADDTAFVVKRAELDFKKAARFEQNLIVETKVIE
LKKASLVFHQRLVDHQGDCYCEGTVLVACVALSRMRPRAIPLNIVQEFDSAS

Specific function: Thioesterase that appears to be involved in phospholipid metabolism. Some specific acyl-ACPs could be physiological substrates. Displays acyl-CoA thioesterase activity on malonyl-CoA in vitro, catalyzing the hydrolysis of the thioester bond [H]

COG id: COG0824

COG function: function code R; Predicted thioesterase

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 4-hydroxybenzoyl-CoA thioesterase family [H]

Homologues:

Organism=Escherichia coli, GI1786957, Length=127, Percent_Identity=48.8188976377953, Blast_Score=134, Evalue=2e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006684
- InterPro:   IPR008272
- InterPro:   IPR006683
- InterPro:   IPR014166 [H]

Pfam domain/function: PF03061 4HBT [H]

EC number: NA

Molecular weight: Translated: 15149; Mature: 15018

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFNWPISVYYEDTDAGGVVYHSNYLNFFERARTEWLRALGVSQTALLADDTAFVVKRAE
CCCCCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCEEEECCHHEEEECCC
LDFKKAARFEQNLIVETKVIELKKASLVFHQRLVDHQGDCYCEGTVLVACVALSRMRPRA
CCHHHHHHHHHCEEEEHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHCCCCC
IPLNIVQEFDSAS
CCHHHHHHCCCCC
>Mature Secondary Structure 
TFNWPISVYYEDTDAGGVVYHSNYLNFFERARTEWLRALGVSQTALLADDTAFVVKRAE
CCCCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCEEEECCHHEEEECCC
LDFKKAARFEQNLIVETKVIELKKASLVFHQRLVDHQGDCYCEGTVLVACVALSRMRPRA
CCHHHHHHHHHCEEEEHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHCCCCC
IPLNIVQEFDSAS
CCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]