Click here to switch to the map view.

The map label for this gene is tolR [H]

Identifier: 117920974

GI number: 117920974

Start: 3029895

End: 3030329

Strand: Reverse

Name: tolR [H]

Synonym: Shewana3_2533

Alternate gene names: 117920974

Gene position: 3030329-3029895 (Counterclockwise)

Preceding gene: 117920975

Following gene: 117920973

Centisome position: 60.95

GC content: 53.56

Gene sequence:

>435_bases
ATGCAAGTCGGTTATCAGCGTAAACGTCGTCGCCCCGTTGCCGAAATCAACGTGGTGCCTTATATCGACGTCATGCTCGT
GCTGCTGATTATTTTCATGGTAACAGCGCCGATTGTGACCCAAGGGGTGAAAGTGGAGCTGCCTCAAGGGGCCGCCGAAG
TGCTGCCTGCGGACAGTAAGCCGCCAGTGGTAGCGTCTATCGATGCCGACGGCGCTTATTTCCTCAATCAGGGCGGTTCC
AATAACGAAGAGATGGAATTGGATGAGTTAGCCACCGCCGTTGCGGCAATCATGGTGACAGAGCCTGAGCGCCCTGTGGT
GGTGAAAGCCGATAGAAATATTCCTTACGATAACGTGATCCAATTGATGGTAACCCTGCAGCAGGCAGGCGTTCCCTCAG
TCGGTTTGATGACGGATTCACCCAAGGAGAAATAG

Upstream 100 bases:

>100_bases
CCACCCAAGTTGAAAAGCTTGAAATCGGTTACGCTAACTTTATGGAAGAGTTCTCTAGCATCCTGCATCGCCAAGCGTAC
AGTGAGAAGGAAGGCGTATA

Downstream 100 bases:

>100_bases
GTGGCGGATAATTCAAATGTTGCATTACCTCTGTCGATTTCAGCAGGTATTCATATTGGCGTGATAATTATTCTGGCCAT
TGGCATAGATTTCACCCATA

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MQVGYQRKRRRPVAEINVVPYIDVMLVLLIIFMVTAPIVTQGVKVELPQGAAEVLPADSKPPVVASIDADGAYFLNQGGS
NNEEMELDELATAVAAIMVTEPERPVVVKADRNIPYDNVIQLMVTLQQAGVPSVGLMTDSPKEK

Sequences:

>Translated_144_residues
MQVGYQRKRRRPVAEINVVPYIDVMLVLLIIFMVTAPIVTQGVKVELPQGAAEVLPADSKPPVVASIDADGAYFLNQGGS
NNEEMELDELATAVAAIMVTEPERPVVVKADRNIPYDNVIQLMVTLQQAGVPSVGLMTDSPKEK
>Mature_144_residues
MQVGYQRKRRRPVAEINVVPYIDVMLVLLIIFMVTAPIVTQGVKVELPQGAAEVLPADSKPPVVASIDADGAYFLNQGGS
NNEEMELDELATAVAAIMVTEPERPVVVKADRNIPYDNVIQLMVTLQQAGVPSVGLMTDSPKEK

Specific function: Involved in the tonB-independent uptake of proteins [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=136, Percent_Identity=36.7647058823529, Blast_Score=84, Evalue=3e-18,
Organism=Escherichia coli, GI1786959, Length=126, Percent_Identity=36.5079365079365, Blast_Score=67, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014168
- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15614; Mature: 15614

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVGYQRKRRRPVAEINVVPYIDVMLVLLIIFMVTAPIVTQGVKVELPQGAAEVLPADSK
CCCCCCHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHCCCCCC
PPVVASIDADGAYFLNQGGSNNEEMELDELATAVAAIMVTEPERPVVVKADRNIPYDNVI
CCEEEEECCCCEEEECCCCCCCCCCCHHHHHHHHHHHHEECCCCCEEEEECCCCCHHHHH
QLMVTLQQAGVPSVGLMTDSPKEK
HHHHHHHHCCCCCEECCCCCCCCC
>Mature Secondary Structure
MQVGYQRKRRRPVAEINVVPYIDVMLVLLIIFMVTAPIVTQGVKVELPQGAAEVLPADSK
CCCCCCHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHCCCCCC
PPVVASIDADGAYFLNQGGSNNEEMELDELATAVAAIMVTEPERPVVVKADRNIPYDNVI
CCEEEEECCCCEEEECCCCCCCCCCCHHHHHHHHHHHHEECCCCCEEEEECCCCCHHHHH
QLMVTLQQAGVPSVGLMTDSPKEK
HHHHHHHHCCCCCEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8955385; 10984043 [H]