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The map label for this gene is ybgF [H]

Identifier: 117920970

GI number: 117920970

Start: 3026174

End: 3026926

Strand: Reverse

Name: ybgF [H]

Synonym: Shewana3_2529

Alternate gene names: 117920970

Gene position: 3026926-3026174 (Counterclockwise)

Preceding gene: 117920971

Following gene: 117920969

Centisome position: 60.88

GC content: 47.81

Gene sequence:

>753_bases
ATGAAACGTGCCGTCTTAATTACGGCAATGTTCTTCGGCGCAGGAGCTGCAGTGGCAGCTCCTGCTCCTGTTGAAGATAT
TGCTGGTGGTTCAGGTGATGACAGACTTGCTCGTTTAGAGCGCATTGTAAAATCGAGACAACAAAGCGAAATTGATATGC
AGCGCCGTCTGGATACTTTGCAGCAAGAAGTTCTCGACTTACGTGGTTTGACTGAACAACAGAATTATCAAATAGAGCAG
ATGCAACAACGTCAGCGTCAGCTTTACGATGAAATTGCCAATTTATCCTCCAAAGCCGCTGTTGCGCCAGCTGCTTCTAC
TCCTGCAACGCCCGCTGCTGTGGCAGCAAGTGCCAATGCCGCCGCCAGTAGCTTAAGTGAAACGGCCAGCTACGAAAGTG
CGGTGAACTTAGTGCTGAAAGAGCGCAAGTATGACGATGCTATTCCAGCGTTTCGCGCTTTCATTAAACAGTATCCTGAC
TCAGTCTATGCCGCCAACGCCAACTATTGGTTAGGACAGTTACTGTTTAATAAGAGTGAATTTGCTGAAGCCAAACAAGC
CTTCAATACTGTCGTGACCCGTTTTAGTGATTCCAACAAACGTGGCGACAGTCTCGTGAAGCTTGGCATGATCGCAGAGA
AAACCGGTGATAAAGCCGGCGCGACTCAATACTACCAACAAGTAGTAAAAGACTACGCCAACAGCGCTGCAGCACGCATT
GCACAACAACAATTGGCTGCAATTAAAGCATAA

Upstream 100 bases:

>100_bases
CGAAGAAAAGCCACTTGACTTCACTCGTACCGATGAAGGTTTTGCTAAAAACCGTCGTGCAGTTTTAGTTTACTAAGATT
GAATTACGGAGAGTAACTAG

Downstream 100 bases:

>100_bases
TTAACTAAAAAACATACTCTTAGTCTGTTTTTCATGCAAACGACAAAAAATTGGGAATTTACGCTTGCATGGGAAAATGA
AAAAGGTATTATAGGCGCCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MKRAVLITAMFFGAGAAVAAPAPVEDIAGGSGDDRLARLERIVKSRQQSEIDMQRRLDTLQQEVLDLRGLTEQQNYQIEQ
MQQRQRQLYDEIANLSSKAAVAPAASTPATPAAVAASANAAASSLSETASYESAVNLVLKERKYDDAIPAFRAFIKQYPD
SVYAANANYWLGQLLFNKSEFAEAKQAFNTVVTRFSDSNKRGDSLVKLGMIAEKTGDKAGATQYYQQVVKDYANSAAARI
AQQQLAAIKA

Sequences:

>Translated_250_residues
MKRAVLITAMFFGAGAAVAAPAPVEDIAGGSGDDRLARLERIVKSRQQSEIDMQRRLDTLQQEVLDLRGLTEQQNYQIEQ
MQQRQRQLYDEIANLSSKAAVAPAASTPATPAAVAASANAAASSLSETASYESAVNLVLKERKYDDAIPAFRAFIKQYPD
SVYAANANYWLGQLLFNKSEFAEAKQAFNTVVTRFSDSNKRGDSLVKLGMIAEKTGDKAGATQYYQQVVKDYANSAAARI
AQQQLAAIKA
>Mature_250_residues
MKRAVLITAMFFGAGAAVAAPAPVEDIAGGSGDDRLARLERIVKSRQQSEIDMQRRLDTLQQEVLDLRGLTEQQNYQIEQ
MQQRQRQLYDEIANLSSKAAVAPAASTPATPAAVAASANAAASSLSETASYESAVNLVLKERKYDDAIPAFRAFIKQYPD
SVYAANANYWLGQLLFNKSEFAEAKQAFNTVVTRFSDSNKRGDSLVKLGMIAEKTGDKAGATQYYQQVVKDYANSAAARI
AQQQLAAIKA

Specific function: Unknown

COG id: COG1729

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786963, Length=235, Percent_Identity=38.7234042553192, Blast_Score=149, Evalue=2e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014162
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27165; Mature: 27165

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHCC
>Mature Secondary Structure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HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1574003; 8905232; 9278503; 7567469 [H]