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The map label for this gene is pal [H]

Identifier: 117920971

GI number: 117920971

Start: 3026951

End: 3027487

Strand: Reverse

Name: pal [H]

Synonym: Shewana3_2530

Alternate gene names: 117920971

Gene position: 3027487-3026951 (Counterclockwise)

Preceding gene: 117920972

Following gene: 117920970

Centisome position: 60.89

GC content: 46.18

Gene sequence:

>537_bases
ATGGATCTGAACAAGTTGTTAAAAGCTATGTTGGTAGCACTTCCAATTATGGCTATTAGTGCGTGTAGCTCAACTTCTGA
ATCAGAAACTGATGCAATGGGCTCTACAAACGGTTCTGGTAGCGAACTGAATGGTGGTGGCGTTCAAACTGGCGGTATTG
GTGGAATGTTGTCACCTGAAGAGCAACAACGTCAGCAACTCGAGCAGTTGAGAAAAGAACACATCATTTACTTCGACTTC
GACCGCAGTGAAGTTCAAACTGAATTCGCCGCCGTACTCGAAGCCCACGGTACTTATTTAGTTGAGCACCCAAGCGTACG
CGTATTGATTGAAGGTCATGCCGACGAGCGTGGCACGCCAGAATACAACATCGCACTGGGTGAGCGTCGTGCTAAAGCTG
TTGCTAAATACTTACAAGGCATGGGTGTACAACCTAGCCAAATGAGCATCGTAAGCTATGGCGAAGAAAAGCCACTTGAC
TTCACTCGTACCGATGAAGGTTTTGCTAAAAACCGTCGTGCAGTTTTAGTTTACTAA

Upstream 100 bases:

>100_bases
TTACCGGTAGGTCAGGGCGAGGTGAAATCACCTTCTTGGTCTCCGTTTCTCTAATGTATTAGCTCGATTTATTCACATTT
AATTTTATAAGGAACAGATA

Downstream 100 bases:

>100_bases
GATTGAATTACGGAGAGTAACTAGATGAAACGTGCCGTCTTAATTACGGCAATGTTCTTCGGCGCAGGAGCTGCAGTGGC
AGCTCCTGCTCCTGTTGAAG

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MDLNKLLKAMLVALPIMAISACSSTSESETDAMGSTNGSGSELNGGGVQTGGIGGMLSPEEQQRQQLEQLRKEHIIYFDF
DRSEVQTEFAAVLEAHGTYLVEHPSVRVLIEGHADERGTPEYNIALGERRAKAVAKYLQGMGVQPSQMSIVSYGEEKPLD
FTRTDEGFAKNRRAVLVY

Sequences:

>Translated_178_residues
MDLNKLLKAMLVALPIMAISACSSTSESETDAMGSTNGSGSELNGGGVQTGGIGGMLSPEEQQRQQLEQLRKEHIIYFDF
DRSEVQTEFAAVLEAHGTYLVEHPSVRVLIEGHADERGTPEYNIALGERRAKAVAKYLQGMGVQPSQMSIVSYGEEKPLD
FTRTDEGFAKNRRAVLVY
>Mature_178_residues
MDLNKLLKAMLVALPIMAISACSSTSESETDAMGSTNGSGSELNGGGVQTGGIGGMLSPEEQQRQQLEQLRKEHIIYFDF
DRSEVQTEFAAVLEAHGTYLVEHPSVRVLIEGHADERGTPEYNIALGERRAKAVAKYLQGMGVQPSQMSIVSYGEEKPLD
FTRTDEGFAKNRRAVLVY

Specific function: Thought to play a role in bacterial envelope integrity. Very strongly associated with the peptidoglycan [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=178, Percent_Identity=51.123595505618, Blast_Score=181, Evalue=3e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 19454; Mature: 19454

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLNKLLKAMLVALPIMAISACSSTSESETDAMGSTNGSGSELNGGGVQTGGIGGMLSPE
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
EQQRQQLEQLRKEHIIYFDFDRSEVQTEFAAVLEAHGTYLVEHPSVRVLIEGHADERGTP
HHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHCCCEEEECCCEEEEEECCCCCCCCC
EYNIALGERRAKAVAKYLQGMGVQPSQMSIVSYGEEKPLDFTRTDEGFAKNRRAVLVY
CEEEEECHHHHHHHHHHHHCCCCCCCHHHHEECCCCCCCCCCCCCCCHHCCCCEEEEC
>Mature Secondary Structure
MDLNKLLKAMLVALPIMAISACSSTSESETDAMGSTNGSGSELNGGGVQTGGIGGMLSPE
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
EQQRQQLEQLRKEHIIYFDFDRSEVQTEFAAVLEAHGTYLVEHPSVRVLIEGHADERGTP
HHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHCCCEEEECCCEEEEEECCCCCCCCC
EYNIALGERRAKAVAKYLQGMGVQPSQMSIVSYGEEKPLDFTRTDEGFAKNRRAVLVY
CEEEEECHHHHHHHHHHHHCCCCCCCHHHHEECCCCCCCCCCCCCCCHHCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]