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The map label for this gene is csgD [H]

Identifier: 117920952

GI number: 117920952

Start: 2999802

End: 3000437

Strand: Reverse

Name: csgD [H]

Synonym: Shewana3_2509

Alternate gene names: 117920952

Gene position: 3000437-2999802 (Counterclockwise)

Preceding gene: 117920954

Following gene: 117920950

Centisome position: 60.34

GC content: 47.96

Gene sequence:

>636_bases
ATGTTCAAAATATTACATTGGATTGTAGTGTCAAGATCGCAAGTTCTGATGGAATTGCTGGCCGGACGCTGGCCGCAGGA
GTTTCTCGTTAAGCTGTCGCAAGTCAGCCCGGATGAGATGTGCGATCAAATCAAAGATAACCAAGCCTCTATGGTGGTGA
TTGATCTTTCCACCGTCGATCTTCAAAAAGCCTATCAATTTCAACGCTTGCTTGCCCGCGAACATCCGAGTGTGCGAGTT
GTTTATATCCAGTTCCCTAAACAAGTTGATGCCCGCTTCTTAATGCAAGCCTCGACCACAGCAGGGGTGTTTTATCTGGA
TGCAGGATTGACTGAAATCAGCCTTGGCCTCTCCAACATCTTGCGCGGACACAGAGTGATCCCTATCCAATTGGTGAATG
GGGTGAATGATGACTTTGGACTATTCGAAGATACCGAGCCATTGACCATCCGTGAGCGTGAAGTGTTACAAGCACTGCTG
TCTGGCAGCACTAACCTCGATATCGCCAATCAATTGTTTGTCAGTGAGAGCACCATTAAGACGCACTTATACCGTGTATT
CCGTAAGATTGGTGTGTCGAGCCGTGGTCAAGCCATCGCGTGGGCGCAAACCTATTTACACGATGTGGTGGTGTAA

Upstream 100 bases:

>100_bases
CGGTAGACTTGGAAGTCTATTGAACGGATGTTGAAGTGGTATTGAGAGATGTTTCTCCTCTCAAAATGAATAATCGTTAA
CCAGACAGGGAGTGAGCAGG

Downstream 100 bases:

>100_bases
TCCATTGTTGATGTATCGCTAAGCCAATATTCAATTGAGCAAACAAAGAATTAAATAAAAAGGGGCAATCGTCGATACGA
TTGCCCCTTTTGTGCTTTAT

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MFKILHWIVVSRSQVLMELLAGRWPQEFLVKLSQVSPDEMCDQIKDNQASMVVIDLSTVDLQKAYQFQRLLAREHPSVRV
VYIQFPKQVDARFLMQASTTAGVFYLDAGLTEISLGLSNILRGHRVIPIQLVNGVNDDFGLFEDTEPLTIREREVLQALL
SGSTNLDIANQLFVSESTIKTHLYRVFRKIGVSSRGQAIAWAQTYLHDVVV

Sequences:

>Translated_211_residues
MFKILHWIVVSRSQVLMELLAGRWPQEFLVKLSQVSPDEMCDQIKDNQASMVVIDLSTVDLQKAYQFQRLLAREHPSVRV
VYIQFPKQVDARFLMQASTTAGVFYLDAGLTEISLGLSNILRGHRVIPIQLVNGVNDDFGLFEDTEPLTIREREVLQALL
SGSTNLDIANQLFVSESTIKTHLYRVFRKIGVSSRGQAIAWAQTYLHDVVV
>Mature_211_residues
MFKILHWIVVSRSQVLMELLAGRWPQEFLVKLSQVSPDEMCDQIKDNQASMVVIDLSTVDLQKAYQFQRLLAREHPSVRV
VYIQFPKQVDARFLMQASTTAGVFYLDAGLTEISLGLSNILRGHRVIPIQLVNGVNDDFGLFEDTEPLTIREREVLQALL
SGSTNLDIANQLFVSESTIKTHLYRVFRKIGVSSRGQAIAWAQTYLHDVVV

Specific function: The master regulator for adhesive curli fimbriae expression; necessary for transcription of the csgBAC/ymdA operon. Plays a positive role in biofilm formation. May have the capability to respond to starvation and/or high cell density by activating csgBA t

COG id: COG2771

COG function: function code K; DNA-binding HTH domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787277, Length=162, Percent_Identity=32.0987654320988, Blast_Score=90, Evalue=9e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 23932; Mature: 23932

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKILHWIVVSRSQVLMELLAGRWPQEFLVKLSQVSPDEMCDQIKDNQASMVVIDLSTVD
CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCEEEEEECHHH
LQKAYQFQRLLAREHPSVRVVYIQFPKQVDARFLMQASTTAGVFYLDAGLTEISLGLSNI
HHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHH
LRGHRVIPIQLVNGVNDDFGLFEDTEPLTIREREVLQALLSGSTNLDIANQLFVSESTIK
HCCCCEEEEEEECCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
THLYRVFRKIGVSSRGQAIAWAQTYLHDVVV
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MFKILHWIVVSRSQVLMELLAGRWPQEFLVKLSQVSPDEMCDQIKDNQASMVVIDLSTVD
CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCEEEEEECHHH
LQKAYQFQRLLAREHPSVRVVYIQFPKQVDARFLMQASTTAGVFYLDAGLTEISLGLSNI
HHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHH
LRGHRVIPIQLVNGVNDDFGLFEDTEPLTIREREVLQALLSGSTNLDIANQLFVSESTIK
HCCCCEEEEEEECCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
THLYRVFRKIGVSSRGQAIAWAQTYLHDVVV
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8817489; 8905232; 9278503 [H]