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The map label for this gene is ycfF [C]

Identifier: 117920950

GI number: 117920950

Start: 2997378

End: 2997734

Strand: Reverse

Name: ycfF [C]

Synonym: Shewana3_2507

Alternate gene names: 117920950

Gene position: 2997734-2997378 (Counterclockwise)

Preceding gene: 117920952

Following gene: 117920949

Centisome position: 60.29

GC content: 50.42

Gene sequence:

>357_bases
ATGGCCGAAGAAACCATTTTCAGCAAAATTATCCGCCGCGAAATTCCCGCCGACATTCTGTATCAAGACGAGCTGGTGAC
GGCATTTAGAGACATTTCGCCAAAGGCGCCAACCCATATTCTGATTGTGCCGAATCATTTGATCCCAACTGCAAATGATA
TGAAAGCCTCGGATGAACCTGCACTCGGCCGGATGATGACAGTGGCGGCTAAACTCGCGGCTGAGGCGGGGATTGCCAAA
GACGGTTATCGTTTGATCATGAACTGCAACAAACATGGCGGACAGGAAGTGTACCATATCCATATTCATCTCGTCGGCGG
AGAGCCATTGGGACCCATGCTGAGCCAAGGTCAATGA

Upstream 100 bases:

>100_bases
CAAAAATGCGCACAACAGGCAAATGAAACGCAAAATATCTGGAGACACAAAGCGTTGAATTGCTAGTATACTATCCCAAT
TAACCCAAGGAGGACTCCCC

Downstream 100 bases:

>100_bases
AGGTTAATCCCGAGTTTTTTCCGCTGACTCAAATGGCGCAGCGATTTGTCGATCAGCTCGCCCAGTGCCGCCGCTTAGGG
CTCACCGTGCTCGAGGCCAG

Product: histidine triad (HIT) protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 118; Mature: 117

Protein sequence:

>118_residues
MAEETIFSKIIRREIPADILYQDELVTAFRDISPKAPTHILIVPNHLIPTANDMKASDEPALGRMMTVAAKLAAEAGIAK
DGYRLIMNCNKHGGQEVYHIHIHLVGGEPLGPMLSQGQ

Sequences:

>Translated_118_residues
MAEETIFSKIIRREIPADILYQDELVTAFRDISPKAPTHILIVPNHLIPTANDMKASDEPALGRMMTVAAKLAAEAGIAK
DGYRLIMNCNKHGGQEVYHIHIHLVGGEPLGPMLSQGQ
>Mature_117_residues
AEETIFSKIIRREIPADILYQDELVTAFRDISPKAPTHILIVPNHLIPTANDMKASDEPALGRMMTVAAKLAAEAGIAKD
GYRLIMNCNKHGGQEVYHIHIHLVGGEPLGPMLSQGQ

Specific function: Unknown

COG id: COG0537

COG function: function code FGR; Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HIT domain [H]

Homologues:

Organism=Homo sapiens, GI4885413, Length=107, Percent_Identity=47.6635514018692, Blast_Score=110, Evalue=3e-25,
Organism=Homo sapiens, GI14211923, Length=109, Percent_Identity=44.954128440367, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI1787346, Length=115, Percent_Identity=79.1304347826087, Blast_Score=176, Evalue=5e-46,
Organism=Caenorhabditis elegans, GI17506713, Length=109, Percent_Identity=43.1192660550459, Blast_Score=107, Evalue=1e-24,
Organism=Drosophila melanogaster, GI28574010, Length=109, Percent_Identity=44.0366972477064, Blast_Score=109, Evalue=4e-25,
Organism=Drosophila melanogaster, GI24581222, Length=109, Percent_Identity=44.0366972477064, Blast_Score=108, Evalue=6e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011146
- InterPro:   IPR011151
- InterPro:   IPR019808
- InterPro:   IPR001310 [H]

Pfam domain/function: PF01230 HIT [H]

EC number: NA

Molecular weight: Translated: 12924; Mature: 12793

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS00892 HIT_1 ; PS51084 HIT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEETIFSKIIRREIPADILYQDELVTAFRDISPKAPTHILIVPNHLIPTANDMKASDEP
CCHHHHHHHHHHHHCCCCCEEHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCC
ALGRMMTVAAKLAAEAGIAKDGYRLIMNCNKHGGQEVYHIHIHLVGGEPLGPMLSQGQ
HHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCCC
>Mature Secondary Structure 
AEETIFSKIIRREIPADILYQDELVTAFRDISPKAPTHILIVPNHLIPTANDMKASDEP
CHHHHHHHHHHHHCCCCCEEHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCC
ALGRMMTVAAKLAAEAGIAKDGYRLIMNCNKHGGQEVYHIHIHLVGGEPLGPMLSQGQ
HHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]