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The map label for this gene is chrR [H]

Identifier: 117920909

GI number: 117920909

Start: 2954217

End: 2954912

Strand: Direct

Name: chrR [H]

Synonym: Shewana3_2466

Alternate gene names: 117920909

Gene position: 2954217-2954912 (Clockwise)

Preceding gene: 117920908

Following gene: 117920910

Centisome position: 59.41

GC content: 47.99

Gene sequence:

>696_bases
ATGATTAAACATCATCCCCATACCGATTTACTGCTAGCCCATGCACAAGGTGAGCTGCCGTTGTCTATGTCGATTGCCAT
TGCGGCCCATTGTGCCCTTTGCCATGAGTGTCAATCGCAAGTCAGCCGCTTTACTGAACAAGCGGCAGAACTCGCCTTTT
TAGCGCCGAGCCAAACCACTGAACCAGCTTTTATCAGCGAAACCGATACCGCACAAGATGACGCCTGGCAGCAAATGTTG
TCGCATATTATGGACTTGCCAGAAGCAACGCCAACTGAAAACGACTATCTCGCCAAAGCGACGGTTTACCTAAATCATAA
GCATGTGCGCTATGAGATCCCTACAGTCTTTCGTCAACATATCGCTCATCCGTGGCAGCAGATTGGTAAAGTCAGCCGAA
TGCGTTTCGATGTGAATGAAAGCCACACCCGCGCCAGCCTATTGCATATCGACGCCTTAGGTGAGATCCCGCAGCATACC
CATAAGGGATACGAACTAACCCTGTTATTGGCAGGAGAATTTTCGGATCTCAACGGGCAGTATGTTCCCGGCGATTTCAT
CATCTTAGATGGCAACACGCATCATTCACCCAAAACCCAGTCTGGGTGCCTCTGCTACACAGTATTAGATGCACCGTTAT
ATTTTACCAAAGGGCTCAGTAAATTATTGAATCCCATTGGTGAGCTGATTTATTAA

Upstream 100 bases:

>100_bases
CAACAAGAATTAGCCGATGCCTTAAAAGTCCCGATTGGCACGATAAAATCGCGACTCAGATTGGGGTTAGAAAAGCTGAA
AAGCTTTTTGGAGACGCAAC

Downstream 100 bases:

>100_bases
TCTCGCTGACATTTAAAATAAGCTGGCAGAGTGAATAACCGATAAACGCAAAATTACAACAAAATACCAACAAACCTATT
TCCCGCTGAGTAAAAAATAA

Product: anti-ECFsigma factor, ChrR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MIKHHPHTDLLLAHAQGELPLSMSIAIAAHCALCHECQSQVSRFTEQAAELAFLAPSQTTEPAFISETDTAQDDAWQQML
SHIMDLPEATPTENDYLAKATVYLNHKHVRYEIPTVFRQHIAHPWQQIGKVSRMRFDVNESHTRASLLHIDALGEIPQHT
HKGYELTLLLAGEFSDLNGQYVPGDFIILDGNTHHSPKTQSGCLCYTVLDAPLYFTKGLSKLLNPIGELIY

Sequences:

>Translated_231_residues
MIKHHPHTDLLLAHAQGELPLSMSIAIAAHCALCHECQSQVSRFTEQAAELAFLAPSQTTEPAFISETDTAQDDAWQQML
SHIMDLPEATPTENDYLAKATVYLNHKHVRYEIPTVFRQHIAHPWQQIGKVSRMRFDVNESHTRASLLHIDALGEIPQHT
HKGYELTLLLAGEFSDLNGQYVPGDFIILDGNTHHSPKTQSGCLCYTVLDAPLYFTKGLSKLLNPIGELIY
>Mature_231_residues
MIKHHPHTDLLLAHAQGELPLSMSIAIAAHCALCHECQSQVSRFTEQAAELAFLAPSQTTEPAFISETDTAQDDAWQQML
SHIMDLPEATPTENDYLAKATVYLNHKHVRYEIPTVFRQHIAHPWQQIGKVSRMRFDVNESHTRASLLHIDALGEIPQHT
HKGYELTLLLAGEFSDLNGQYVPGDFIILDGNTHHSPKTQSGCLCYTVLDAPLYFTKGLSKLLNPIGELIY

Specific function: Anti-sigma factor that inhibits the activity of the extracytoplasmic function (ECF) sigma (E) factor, thereby indirectly regulating the transcription of the cycA and rpoE genes [H]

COG id: COG3806

COG function: function code T; Anti-sigma factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012807
- InterPro:   IPR011051
- InterPro:   IPR014710 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25873; Mature: 25873

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKHHPHTDLLLAHAQGELPLSMSIAIAAHCALCHECQSQVSRFTEQAAELAFLAPSQTT
CCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCC
EPAFISETDTAQDDAWQQMLSHIMDLPEATPTENDYLAKATVYLNHKHVRYEIPTVFRQH
CCCEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCEEEEEHHHHHHHH
IAHPWQQIGKVSRMRFDVNESHTRASLLHIDALGEIPQHTHKGYELTLLLAGEFSDLNGQ
HCCHHHHHHHHHHEEECCCCCCHHHHEEEEHHHHCCHHHCCCCEEEEEEEEECCCCCCCC
YVPGDFIILDGNTHHSPKTQSGCLCYTVLDAPLYFTKGLSKLLNPIGELIY
CCCCCEEEECCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIKHHPHTDLLLAHAQGELPLSMSIAIAAHCALCHECQSQVSRFTEQAAELAFLAPSQTT
CCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCC
EPAFISETDTAQDDAWQQMLSHIMDLPEATPTENDYLAKATVYLNHKHVRYEIPTVFRQH
CCCEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCEEEEEHHHHHHHH
IAHPWQQIGKVSRMRFDVNESHTRASLLHIDALGEIPQHTHKGYELTLLLAGEFSDLNGQ
HCCHHHHHHHHHHEEECCCCCCHHHHEEEEHHHHCCHHHCCCCEEEEEEEEECCCCCCCC
YVPGDFIILDGNTHHSPKTQSGCLCYTVLDAPLYFTKGLSKLLNPIGELIY
CCCCCEEEECCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7721683 [H]