Click here to switch to the map view.

The map label for this gene is sigK [H]

Identifier: 117920908

GI number: 117920908

Start: 2953556

End: 2954224

Strand: Direct

Name: sigK [H]

Synonym: Shewana3_2465

Alternate gene names: 117920908

Gene position: 2953556-2954224 (Clockwise)

Preceding gene: 117920907

Following gene: 117920909

Centisome position: 59.4

GC content: 46.94

Gene sequence:

>669_bases
ATGGAAAATTTTCAATCACATTTAGCGCAAAATCGCTATGATAGACAGTTATCATCCCCTATCGATATGGCTATGGAAAA
CGATAGCACTATTTCAACAGCCAATGAGCCAATCACAGATGCGGATCCTTTAGCGCGCGCCATTTTAAGAGTCGCGAATC
AACGGGATAAAGCCGCCTTTGCGGAATTGTTCAGCCATTTTATGCCCAAAATTCGCGCATTCGGTCTGCAACGCTTAAAT
CAGCAAGGGCTGGCCATGGATCTGGTGCAAGAAACCATGACCTTAGTGTGGACCAAGGCCCATTTGTACAATGCCGACAA
AGGCTCGGTCGCGACCTGGGTATTTACCATTATGCGCAACCAGTGTTTCGACATGCTCAGGCGTATCCAACATAACCGTG
AAGATGCCTTCGGGGATGATATTTGGCCTATTTACGATGTCGCCGTCAGTCAAGAAAACGGCCCTGATCATAAACTCACC
GCCAAGCTACTCGCGCATTTAGATTCCCTGCCCTTGCCTCAACGCCAAGTGGTTCAAGGGATCTATATGCAAGAGCTCAC
GCAACAAGAATTAGCCGATGCCTTAAAAGTCCCGATTGGCACGATAAAATCGCGACTCAGATTGGGGTTAGAAAAGCTGA
AAAGCTTTTTGGAGACGCAACATGATTAA

Upstream 100 bases:

>100_bases
GCGCGCCACGTATTGCTCTGTATGCTTATCGAATGTCGGCCCTGACGTAACATCTTTTGTGATGTTCAGACTGGATTGAA
CCTTAAGTAAAGAGCTAATA

Downstream 100 bases:

>100_bases
ACATCATCCCCATACCGATTTACTGCTAGCCCATGCACAAGGTGAGCTGCCGTTGTCTATGTCGATTGCCATTGCGGCCC
ATTGTGCCCTTTGCCATGAG

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-K factor [H]

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MENFQSHLAQNRYDRQLSSPIDMAMENDSTISTANEPITDADPLARAILRVANQRDKAAFAELFSHFMPKIRAFGLQRLN
QQGLAMDLVQETMTLVWTKAHLYNADKGSVATWVFTIMRNQCFDMLRRIQHNREDAFGDDIWPIYDVAVSQENGPDHKLT
AKLLAHLDSLPLPQRQVVQGIYMQELTQQELADALKVPIGTIKSRLRLGLEKLKSFLETQHD

Sequences:

>Translated_222_residues
MENFQSHLAQNRYDRQLSSPIDMAMENDSTISTANEPITDADPLARAILRVANQRDKAAFAELFSHFMPKIRAFGLQRLN
QQGLAMDLVQETMTLVWTKAHLYNADKGSVATWVFTIMRNQCFDMLRRIQHNREDAFGDDIWPIYDVAVSQENGPDHKLT
AKLLAHLDSLPLPQRQVVQGIYMQELTQQELADALKVPIGTIKSRLRLGLEKLKSFLETQHD
>Mature_222_residues
MENFQSHLAQNRYDRQLSSPIDMAMENDSTISTANEPITDADPLARAILRVANQRDKAAFAELFSHFMPKIRAFGLQRLN
QQGLAMDLVQETMTLVWTKAHLYNADKGSVATWVFTIMRNQCFDMLRRIQHNREDAFGDDIWPIYDVAVSQENGPDHKLT
AKLLAHLDSLPLPQRQVVQGIYMQELTQQELADALKVPIGTIKSRLRLGLEKLKSFLETQHD

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 25376; Mature: 25376

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENFQSHLAQNRYDRQLSSPIDMAMENDSTISTANEPITDADPLARAILRVANQRDKAAF
CCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHH
AELFSHFMPKIRAFGLQRLNQQGLAMDLVQETMTLVWTKAHLYNADKGSVATWVFTIMRN
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
QCFDMLRRIQHNREDAFGDDIWPIYDVAVSQENGPDHKLTAKLLAHLDSLPLPQRQVVQG
HHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHH
IYMQELTQQELADALKVPIGTIKSRLRLGLEKLKSFLETQHD
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MENFQSHLAQNRYDRQLSSPIDMAMENDSTISTANEPITDADPLARAILRVANQRDKAAF
CCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHH
AELFSHFMPKIRAFGLQRLNQQGLAMDLVQETMTLVWTKAHLYNADKGSVATWVFTIMRN
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
QCFDMLRRIQHNREDAFGDDIWPIYDVAVSQENGPDHKLTAKLLAHLDSLPLPQRQVVQG
HHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHH
IYMQELTQQELADALKVPIGTIKSRLRLGLEKLKSFLETQHD
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]