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The map label for this gene is ybbN [H]

Identifier: 117920885

GI number: 117920885

Start: 2928428

End: 2929291

Strand: Reverse

Name: ybbN [H]

Synonym: Shewana3_2442

Alternate gene names: 117920885

Gene position: 2929291-2928428 (Counterclockwise)

Preceding gene: 117920886

Following gene: 117920884

Centisome position: 58.91

GC content: 50.81

Gene sequence:

>864_bases
ATGGACAATATCCTCGATCTAACGAAAGACAATATTCAGCAAGTGGTTGATGCTTCGATGCAGCAACTGGTGGTGATGGT
GTTTTGGGCCCAGCCACAGCCGCAGAGTGTTGCCATGGTGCAAACACTCGAGCAACTTGCCGCGCAACATGCTGGCCGTT
TTGTGCTGGCGAAAGTGAACTGCGAAACCGAGCTGGAAATCGCTAACTATTTCCGCATTCAAGCACTGCCGACCACCTTA
GTGCTCGATAAGGGCCAGCCAATCGATGGCTTTGCGGGTATGCAAGAGGCGGCGCAGGTGAGCGCTATGCTGGAGAAACA
CTTGCCACCCCTATGGCAATTACAGCTTGAGCAAGCCAAAGCCCTGTTAGCCTTAAGCCAAGTGTCGGCGGAGGATTTAT
CCACGGCGGCCGTGTTACTGAAAGACGCCCATAGCGCCTCACATCAGGCGGCCGAGGTGAGTTTAGTGCTTGCCGATGTG
TACTTGATGCAGGGTGAACTCGCCCAAGCGCAGCTGCTACTCGAGCAGATTGGCCTTGCCGACCAAGATGGTTATTACCA
GAGCTTAAAGGCGAAATTAACCCTTGCTTTGGATGCGGCGGACACGCCAGAAATTCGTGATTTGCAGCAGAAGTTCGAGC
ATAATCCGCAGGATTTAGTGTTATTACTCGAACTTTGTAAGGCCTTGCATTCGGCCCACCGAGACGAAGAAGCGCTTGCA
CATTTATACAGTGTGTTATCTAAGGATTTAACCGCTGAAAATGGCAAAGTAAAACAAGTCTTTATGGAGATTTTAACGGC
GCTTGGGCAAGGCAATAGTCTGGCGAATCAGTACCGCCGTAAGCTCTATACCTTGCTCTATTAA

Upstream 100 bases:

>100_bases
AGTCGAGACACAAGTGCCCCGATTCCGTTTTAGGCACCGCAAAGAGCATTATCCTAGGGCATTTCTCTGTAGAGGTGCCA
GTTTGGGAGTAAGGAAAACC

Downstream 100 bases:

>100_bases
GGATTAAATTGGCCGCAAAACTGCGATTTATTTACGGTTTCTGAGGCTAAAGTCGAAGCTAAAAGCCTTCTCAATGGCGG
CCAGATGTGCGAAGATCGCC

Product: thioredoxin domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MDNILDLTKDNIQQVVDASMQQLVVMVFWAQPQPQSVAMVQTLEQLAAQHAGRFVLAKVNCETELEIANYFRIQALPTTL
VLDKGQPIDGFAGMQEAAQVSAMLEKHLPPLWQLQLEQAKALLALSQVSAEDLSTAAVLLKDAHSASHQAAEVSLVLADV
YLMQGELAQAQLLLEQIGLADQDGYYQSLKAKLTLALDAADTPEIRDLQQKFEHNPQDLVLLLELCKALHSAHRDEEALA
HLYSVLSKDLTAENGKVKQVFMEILTALGQGNSLANQYRRKLYTLLY

Sequences:

>Translated_287_residues
MDNILDLTKDNIQQVVDASMQQLVVMVFWAQPQPQSVAMVQTLEQLAAQHAGRFVLAKVNCETELEIANYFRIQALPTTL
VLDKGQPIDGFAGMQEAAQVSAMLEKHLPPLWQLQLEQAKALLALSQVSAEDLSTAAVLLKDAHSASHQAAEVSLVLADV
YLMQGELAQAQLLLEQIGLADQDGYYQSLKAKLTLALDAADTPEIRDLQQKFEHNPQDLVLLLELCKALHSAHRDEEALA
HLYSVLSKDLTAENGKVKQVFMEILTALGQGNSLANQYRRKLYTLLY
>Mature_287_residues
MDNILDLTKDNIQQVVDASMQQLVVMVFWAQPQPQSVAMVQTLEQLAAQHAGRFVLAKVNCETELEIANYFRIQALPTTL
VLDKGQPIDGFAGMQEAAQVSAMLEKHLPPLWQLQLEQAKALLALSQVSAEDLSTAAVLLKDAHSASHQAAEVSLVLADV
YLMQGELAQAQLLLEQIGLADQDGYYQSLKAKLTLALDAADTPEIRDLQQKFEHNPQDLVLLLELCKALHSAHRDEEALA
HLYSVLSKDLTAENGKVKQVFMEILTALGQGNSLANQYRRKLYTLLY

Specific function: Unknown

COG id: COG3118

COG function: function code O; Thioredoxin domain-containing protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Escherichia coli, GI87081747, Length=287, Percent_Identity=41.8118466898955, Blast_Score=216, Evalue=2e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005746
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR013766
- InterPro:   IPR012335
- InterPro:   IPR011990 [H]

Pfam domain/function: PF00085 Thioredoxin [H]

EC number: NA

Molecular weight: Translated: 31755; Mature: 31755

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNILDLTKDNIQQVVDASMQQLVVMVFWAQPQPQSVAMVQTLEQLAAQHAGRFVLAKVN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEC
CETELEIANYFRIQALPTTLVLDKGQPIDGFAGMQEAAQVSAMLEKHLPPLWQLQLEQAK
CCCHHHHHHHHHHEECCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
ALLALSQVSAEDLSTAAVLLKDAHSASHQAAEVSLVLADVYLMQGELAQAQLLLEQIGLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DQDGYYQSLKAKLTLALDAADTPEIRDLQQKFEHNPQDLVLLLELCKALHSAHRDEEALA
CCCCHHHHHHHHEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHH
HLYSVLSKDLTAENGKVKQVFMEILTALGQGNSLANQYRRKLYTLLY
HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDNILDLTKDNIQQVVDASMQQLVVMVFWAQPQPQSVAMVQTLEQLAAQHAGRFVLAKVN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEC
CETELEIANYFRIQALPTTLVLDKGQPIDGFAGMQEAAQVSAMLEKHLPPLWQLQLEQAK
CCCHHHHHHHHHHEECCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
ALLALSQVSAEDLSTAAVLLKDAHSASHQAAEVSLVLADVYLMQGELAQAQLLLEQIGLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DQDGYYQSLKAKLTLALDAADTPEIRDLQQKFEHNPQDLVLLLELCKALHSAHRDEEALA
CCCCHHHHHHHHEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHH
HLYSVLSKDLTAENGKVKQVFMEILTALGQGNSLANQYRRKLYTLLY
HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]