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The map label for this gene is yebA [C]

Identifier: 117920866

GI number: 117920866

Start: 2905409

End: 2906329

Strand: Reverse

Name: yebA [C]

Synonym: Shewana3_2423

Alternate gene names: 117920866

Gene position: 2906329-2905409 (Counterclockwise)

Preceding gene: 117920867

Following gene: 117920862

Centisome position: 58.45

GC content: 50.16

Gene sequence:

>921_bases
ATGCTAAACGCTTTACCAAATGCGCTACCTAAGTTGTTAAAAACTTTGCCGAATACACCATCGCGCACTTGTAAGACTGC
GATCTTGTCGTTCTTAACTCTGTTTAGCTTATCGACTCAGGCGCAGGTCAGCTTTGAAGGGCAATTTGAGCAGGGCGCGT
TAATTCGTGGTAAAGCGCCGGCGGGCACGCAGATAAGTCTTAATGGTGAAGCATTAAAAGTGACGCCAGACGGCCATTTT
GCCTTTGGTTTTGATAGGGATGCGCAGCTGAGTCAAGAGCTACGCTTGGTCTATCCCGATGGCTTAACCGAAGTCAAACC
GCTTAGTGTCACTAAGCGTGAATACAATATTCAGAGCGTTAAGGGCATCAGCAATAAAATCATGAAGCCCGATCCGGTGG
CCCAGGAGCGAGCAGCTAAAGATACGGCGCAGGTGAAAGCGGCTCGTGGCACTTTTAGCGAGCAAACGGCATTTTTACAG
TCGTTTATTTGGCCATTAACCGGCAGGATCTCGGGCGTCTATGGCAGTCAGCGTATTTATAACGATGTCCCAGGCAATCC
ACATTTTGGTGTGGATGTCGCCGCGAAAACTGGCACTGTGGTAGTCGCGCCTGCCGATGGCGTGATTAGTCTTTCGGTTC
CCGATATGTTTTATTCGGGCGGCACTATGATCATCGACCATGGTTATGGTGTGAGTTCCAGCTTTTTGCACTTAAGCAAA
CTCTATGTCAATGCGGGCGAAACCGTTAAGCAAGGGCAAGCAGTGGCAGAAGTCGGCGCGACAGGCCGAGCGAATGGCCC
GCATTTAGATTGGCGATTAAACTGGTATCAAATGCGCCTCGATCCTACAACCATAGTGCCCTCTATGGCGACCGTGCTGG
CGGCGGAAAAAGCACAGAAAGCGCAAAAAGTCGCGAAGTAA

Upstream 100 bases:

>100_bases
GGGGAAAGGCGCCATCGTAAGTAAAGGCAATTAACCCGTCGATTTTTTATAACGCCCTAATCTTTAGGGCGTTATTGTTT
GAATAAGGATTTTTGAGAAG

Downstream 100 bases:

>100_bases
CTCCCGCGACTATCTCTTAGTCTATCTCTTATCTCCTAACTGGGCGCCTAATCATTGGCGCCCTGTTTTATGCTTGAGCG
GTTATTGCAATAACGGGTGA

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MLNALPNALPKLLKTLPNTPSRTCKTAILSFLTLFSLSTQAQVSFEGQFEQGALIRGKAPAGTQISLNGEALKVTPDGHF
AFGFDRDAQLSQELRLVYPDGLTEVKPLSVTKREYNIQSVKGISNKIMKPDPVAQERAAKDTAQVKAARGTFSEQTAFLQ
SFIWPLTGRISGVYGSQRIYNDVPGNPHFGVDVAAKTGTVVVAPADGVISLSVPDMFYSGGTMIIDHGYGVSSSFLHLSK
LYVNAGETVKQGQAVAEVGATGRANGPHLDWRLNWYQMRLDPTTIVPSMATVLAAEKAQKAQKVAK

Sequences:

>Translated_306_residues
MLNALPNALPKLLKTLPNTPSRTCKTAILSFLTLFSLSTQAQVSFEGQFEQGALIRGKAPAGTQISLNGEALKVTPDGHF
AFGFDRDAQLSQELRLVYPDGLTEVKPLSVTKREYNIQSVKGISNKIMKPDPVAQERAAKDTAQVKAARGTFSEQTAFLQ
SFIWPLTGRISGVYGSQRIYNDVPGNPHFGVDVAAKTGTVVVAPADGVISLSVPDMFYSGGTMIIDHGYGVSSSFLHLSK
LYVNAGETVKQGQAVAEVGATGRANGPHLDWRLNWYQMRLDPTTIVPSMATVLAAEKAQKAQKVAK
>Mature_306_residues
MLNALPNALPKLLKTLPNTPSRTCKTAILSFLTLFSLSTQAQVSFEGQFEQGALIRGKAPAGTQISLNGEALKVTPDGHF
AFGFDRDAQLSQELRLVYPDGLTEVKPLSVTKREYNIQSVKGISNKIMKPDPVAQERAAKDTAQVKAARGTFSEQTAFLQ
SFIWPLTGRISGVYGSQRIYNDVPGNPHFGVDVAAKTGTVVVAPADGVISLSVPDMFYSGGTMIIDHGYGVSSSFLHLSK
LYVNAGETVKQGQAVAEVGATGRANGPHLDWRLNWYQMRLDPTTIVPSMATVLAAEKAQKAQKVAK

Specific function: Could Be Involved In Cell Wall Degradation Or Formation. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M23B family [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=152, Percent_Identity=32.8947368421053, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR007340
- InterPro:   IPR016047
- InterPro:   IPR002886 [H]

Pfam domain/function: PF04225 OapA; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 32923; Mature: 32923

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNALPNALPKLLKTLPNTPSRTCKTAILSFLTLFSLSTQAQVSFEGQFEQGALIRGKAP
CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEECCCC
AGTQISLNGEALKVTPDGHFAFGFDRDAQLSQELRLVYPDGLTEVKPLSVTKREYNIQSV
CCCEEEECCCEEEECCCCCEEECCCCCCHHCCCEEEECCCCCCCCCCCEEEHHHCCHHHH
KGISNKIMKPDPVAQERAAKDTAQVKAARGTFSEQTAFLQSFIWPLTGRISGVYGSQRIY
HHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCEECCCCCCHHH
NDVPGNPHFGVDVAAKTGTVVVAPADGVISLSVPDMFYSGGTMIIDHGYGVSSSFLHLSK
CCCCCCCCCCEEEEECCCEEEEECCCCEEEEECCHHEECCCEEEEECCCCCCHHHHHHHH
LYVNAGETVKQGQAVAEVGATGRANGPHLDWRLNWYQMRLDPTTIVPSMATVLAAEKAQK
HHCCCCCHHHHCHHHHHHCCCCCCCCCEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHH
AQKVAK
HHHHCC
>Mature Secondary Structure
MLNALPNALPKLLKTLPNTPSRTCKTAILSFLTLFSLSTQAQVSFEGQFEQGALIRGKAP
CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEECCCC
AGTQISLNGEALKVTPDGHFAFGFDRDAQLSQELRLVYPDGLTEVKPLSVTKREYNIQSV
CCCEEEECCCEEEECCCCCEEECCCCCCHHCCCEEEECCCCCCCCCCCEEEHHHCCHHHH
KGISNKIMKPDPVAQERAAKDTAQVKAARGTFSEQTAFLQSFIWPLTGRISGVYGSQRIY
HHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCEECCCCCCHHH
NDVPGNPHFGVDVAAKTGTVVVAPADGVISLSVPDMFYSGGTMIIDHGYGVSSSFLHLSK
CCCCCCCCCCEEEEECCCEEEEECCCCEEEEECCHHEECCCEEEEECCCCCCHHHHHHHH
LYVNAGETVKQGQAVAEVGATGRANGPHLDWRLNWYQMRLDPTTIVPSMATVLAAEKAQK
HHCCCCCHHHHCHHHHHHCCCCCCCCCEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHH
AQKVAK
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]