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The map label for this gene is yafK [C]

Identifier: 117920863

GI number: 117920863

Start: 2903581

End: 2904141

Strand: Direct

Name: yafK [C]

Synonym: Shewana3_2420

Alternate gene names: 117920863

Gene position: 2903581-2904141 (Clockwise)

Preceding gene: 117920861

Following gene: 117920864

Centisome position: 58.4

GC content: 49.55

Gene sequence:

>561_bases
ATGATGCGCGAAAAACCTATATCTGCGTTATTTTTAGAGGAAGACATGCGCGTACCCCTACTCACTAAAACAATTACTGT
GGCCATGACTCTCGCCGCACTGATTTCACCCCAAGTGCTCGCCTCATCGGGTATAGGTAAAGTCGATTTAGTGGTGATCA
CTAAGTCTGAGTCCAATATGGCGCTATTAAGGGACGGCAAAATCCTCAAGCAATACCGTATTGCCATGGGTGACTTACCG
ACGGGTCACAAGTTAACTGAAGGTGACCAACGTACGCCGCAGGGCCGTTATATTCTGGACTACAAAAAATCCGATAGCGC
CTATTACAAATCGATCCATATTTCTTATCCCAATGAAGAAGATAAGTTAAGAGCCAAGGCGCTGGGGATCCGCCCGGGTG
GCATGATCATGATCCACGGCCAGAACCCACGTTCACCTCTCACTCCCGAGCAGGCGCAGCAATACAACTGGACCGACGGT
TGTATCGCCATTACCAACGCCGAGATGGATGAAGTGTGGAAAGCCGTTGATGAAGGCACGCCCATCGAGATTTGGCCCTA
A

Upstream 100 bases:

>100_bases
CCTTGCGACAAAAAGCGTTATCTTTTCCAAATCCCCAAAGTCTGCCATGCAATTGCCACTAGCTCAAAATTATCTACTCA
CATAGACATAAAATTGCGGT

Downstream 100 bases:

>100_bases
GCGCTAAGCTTGATTAGCCCTATGCGACTCAACGCCCAGTCAAATGGGCGTTTTTGTTTGTACCCGTTTTAAGGATGTTT
TATGTCAACAATCACTACAG

Product: hypothetical protein

Products: NA

Alternate protein names: ErfK/YbiS/YcfS/YnhG; Lipoprotein; ErfK/YbiS/YcfS/YnhG-Related Protein; ErfK/YbiS/YcfS/YnhG Protein; Peptidoglycan L D-Transpeptidase Lipoprotein; Protein ERFK

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MMREKPISALFLEEDMRVPLLTKTITVAMTLAALISPQVLASSGIGKVDLVVITKSESNMALLRDGKILKQYRIAMGDLP
TGHKLTEGDQRTPQGRYILDYKKSDSAYYKSIHISYPNEEDKLRAKALGIRPGGMIMIHGQNPRSPLTPEQAQQYNWTDG
CIAITNAEMDEVWKAVDEGTPIEIWP

Sequences:

>Translated_186_residues
MMREKPISALFLEEDMRVPLLTKTITVAMTLAALISPQVLASSGIGKVDLVVITKSESNMALLRDGKILKQYRIAMGDLP
TGHKLTEGDQRTPQGRYILDYKKSDSAYYKSIHISYPNEEDKLRAKALGIRPGGMIMIHGQNPRSPLTPEQAQQYNWTDG
CIAITNAEMDEVWKAVDEGTPIEIWP
>Mature_186_residues
MMREKPISALFLEEDMRVPLLTKTITVAMTLAALISPQVLASSGIGKVDLVVITKSESNMALLRDGKILKQYRIAMGDLP
TGHKLTEGDQRTPQGRYILDYKKSDSAYYKSIHISYPNEEDKLRAKALGIRPGGMIMIHGQNPRSPLTPEQAQQYNWTDG
CIAITNAEMDEVWKAVDEGTPIEIWP

Specific function: Unknown

COG id: COG3034

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20758; Mature: 20758

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMREKPISALFLEEDMRVPLLTKTITVAMTLAALISPQVLASSGIGKVDLVVITKSESNM
CCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCHHHHCCCCCEEEEEEEEECCCCE
ALLRDGKILKQYRIAMGDLPTGHKLTEGDQRTPQGRYILDYKKSDSAYYKSIHISYPNEE
EEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCH
DKLRAKALGIRPGGMIMIHGQNPRSPLTPEQAQQYNWTDGCIAITNAEMDEVWKAVDEGT
HHEEHHHEECCCCCEEEEECCCCCCCCCHHHHHCCCCCCCEEEEECCCHHHHHHHHCCCC
PIEIWP
CEEECC
>Mature Secondary Structure
MMREKPISALFLEEDMRVPLLTKTITVAMTLAALISPQVLASSGIGKVDLVVITKSESNM
CCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCHHHHCCCCCEEEEEEEEECCCCE
ALLRDGKILKQYRIAMGDLPTGHKLTEGDQRTPQGRYILDYKKSDSAYYKSIHISYPNEE
EEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCH
DKLRAKALGIRPGGMIMIHGQNPRSPLTPEQAQQYNWTDGCIAITNAEMDEVWKAVDEGT
HHEEHHHEECCCCCEEEEECCCCCCCCCHHHHHCCCCCCCEEEEECCCHHHHHHHHCCCC
PIEIWP
CEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA