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The map label for this gene is ydaM [H]

Identifier: 117920851

GI number: 117920851

Start: 2886847

End: 2887872

Strand: Direct

Name: ydaM [H]

Synonym: Shewana3_2408

Alternate gene names: 117920851

Gene position: 2886847-2887872 (Clockwise)

Preceding gene: 117920849

Following gene: 117920855

Centisome position: 58.06

GC content: 49.9

Gene sequence:

>1026_bases
ATGTCACGAGATTTATTACAAACCGCAGCCTTAAATCTTAAAAAAGCGGTTCCCTTAATGCTCAAGCATCAAATTCCCAC
CACGCCAATCAATTATGCCCTGTGGTATACCTACGTGGGCGAACAAAACCCAGCGTTAAACGCACAGCTTGATACGGTTA
TCGCCCACTACAACACTTGCCCGCCAGTCAGTAGCGAGTTGTTGTTTCGCCAGTATGTCGCCGATCCGGTTGAGTTGGAT
GTTCGCGATATGCGGCTCAACCTTGAGGCCATGGCCACTGAGCTGTCGCAATCGATTCGGGATACCAATCTCGATGCAAC
TGAGTTCCAGACCTGTATTAACACCAACTTTGCCAAACTCAATGGCATTGAAGAAGGCGCGCTTAGCGTCGAGCAAGTGC
TGGATTTAGTGCGTAATTTGGTGAAAGAGTCCGAGAATATTCGCTCGAGCACTGAGTATTTCACTTCCCAGTTACAAAAA
GCACAGACTGAGATTGATGCGTTAAAACAAAAGCTTGAAAAATCAGAGAAAGATGTACTTTACGATGCACTCACGGGCTG
TTTAAACCGCCGCGCCTTCGACGCCGACCTCGCCGGCATGTTGGCACAGGCCCCCGAGGGCACCTGTCTTATCTTGGTCG
ATATCGATCACTTTAAAGCCTTTAACGACAACTATGGCCACCAGCTGGGCGATCAAGTATTAAAAGCTGTATCAAAGCGT
TTGCAGGAAGCCTGTCGGGATGGTTGTAAGTTGTACCGCTTCGGCGGCGAGGAGTTTGCGATTATCGTGCCGAAAAGCCA
ACTGCGTATTGCGCGGCAACTGGCCGAGGCCATGCGCCGTGGGCTCGAGAAACTCAGCCTCAAGGATAGGCGCAAAGATC
AACGTATCGACAATATCACCGCCTCCTTCGGTGTCGCCCAGTGGCAGGAAAAACAAGTGGCTATTCACCTCATCGAAAGA
GCGGATATGCTACTTTATGAAGCCAAACGCTTAGGTCGAAATCGGGTGATGCCGATGAGCAACTAG

Upstream 100 bases:

>100_bases
CTGCATTTGGGCATTAGTTGTAACGGGATTTAACGAGCAAAACTGTTTACCCAAATGTGGTATACCAAGTTTATCGAGTT
ATTTTTATTGGGATGTATCC

Downstream 100 bases:

>100_bases
CTCGAACAAAAAGGCAGAACTCTGGTTCTGCCTTTTTGTTCATCACGCCAGTTTTCACGCCATGCCCATCAGGCCATGGT
TATCACGCTTTGATTGTCGT

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 340

Protein sequence:

>341_residues
MSRDLLQTAALNLKKAVPLMLKHQIPTTPINYALWYTYVGEQNPALNAQLDTVIAHYNTCPPVSSELLFRQYVADPVELD
VRDMRLNLEAMATELSQSIRDTNLDATEFQTCINTNFAKLNGIEEGALSVEQVLDLVRNLVKESENIRSSTEYFTSQLQK
AQTEIDALKQKLEKSEKDVLYDALTGCLNRRAFDADLAGMLAQAPEGTCLILVDIDHFKAFNDNYGHQLGDQVLKAVSKR
LQEACRDGCKLYRFGGEEFAIIVPKSQLRIARQLAEAMRRGLEKLSLKDRRKDQRIDNITASFGVAQWQEKQVAIHLIER
ADMLLYEAKRLGRNRVMPMSN

Sequences:

>Translated_341_residues
MSRDLLQTAALNLKKAVPLMLKHQIPTTPINYALWYTYVGEQNPALNAQLDTVIAHYNTCPPVSSELLFRQYVADPVELD
VRDMRLNLEAMATELSQSIRDTNLDATEFQTCINTNFAKLNGIEEGALSVEQVLDLVRNLVKESENIRSSTEYFTSQLQK
AQTEIDALKQKLEKSEKDVLYDALTGCLNRRAFDADLAGMLAQAPEGTCLILVDIDHFKAFNDNYGHQLGDQVLKAVSKR
LQEACRDGCKLYRFGGEEFAIIVPKSQLRIARQLAEAMRRGLEKLSLKDRRKDQRIDNITASFGVAQWQEKQVAIHLIER
ADMLLYEAKRLGRNRVMPMSN
>Mature_340_residues
SRDLLQTAALNLKKAVPLMLKHQIPTTPINYALWYTYVGEQNPALNAQLDTVIAHYNTCPPVSSELLFRQYVADPVELDV
RDMRLNLEAMATELSQSIRDTNLDATEFQTCINTNFAKLNGIEEGALSVEQVLDLVRNLVKESENIRSSTEYFTSQLQKA
QTEIDALKQKLEKSEKDVLYDALTGCLNRRAFDADLAGMLAQAPEGTCLILVDIDHFKAFNDNYGHQLGDQVLKAVSKRL
QEACRDGCKLYRFGGEEFAIIVPKSQLRIARQLAEAMRRGLEKLSLKDRRKDQRIDNITASFGVAQWQEKQVAIHLIERA
DMLLYEAKRLGRNRVMPMSN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=179, Percent_Identity=37.9888268156425, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1787262, Length=158, Percent_Identity=37.9746835443038, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1787816, Length=160, Percent_Identity=39.375, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI145693134, Length=210, Percent_Identity=33.8095238095238, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1787802, Length=164, Percent_Identity=32.9268292682927, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1786584, Length=159, Percent_Identity=32.7044025157233, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787056, Length=224, Percent_Identity=32.1428571428571, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1788085, Length=185, Percent_Identity=31.8918918918919, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI87082007, Length=167, Percent_Identity=38.3233532934132, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788956, Length=224, Percent_Identity=27.2321428571429, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1788381, Length=161, Percent_Identity=30.4347826086957, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI87081974, Length=108, Percent_Identity=32.4074074074074, Blast_Score=65, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 38653; Mature: 38522

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRDLLQTAALNLKKAVPLMLKHQIPTTPINYALWYTYVGEQNPALNAQLDTVIAHYNTC
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCC
PPVSSELLFRQYVADPVELDVRDMRLNLEAMATELSQSIRDTNLDATEFQTCINTNFAKL
CCCHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHH
NGIEEGALSVEQVLDLVRNLVKESENIRSSTEYFTSQLQKAQTEIDALKQKLEKSEKDVL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YDALTGCLNRRAFDADLAGMLAQAPEGTCLILVDIDHFKAFNDNYGHQLGDQVLKAVSKR
HHHHHHHHHCCCCCHHHHHHHHCCCCCCEEEEEECHHHHHCCCCCCHHHHHHHHHHHHHH
LQEACRDGCKLYRFGGEEFAIIVPKSQLRIARQLAEAMRRGLEKLSLKDRRKDQRIDNIT
HHHHHHCCHHEEEECCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASFGVAQWQEKQVAIHLIERADMLLYEAKRLGRNRVMPMSN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SRDLLQTAALNLKKAVPLMLKHQIPTTPINYALWYTYVGEQNPALNAQLDTVIAHYNTC
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCC
PPVSSELLFRQYVADPVELDVRDMRLNLEAMATELSQSIRDTNLDATEFQTCINTNFAKL
CCCHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHH
NGIEEGALSVEQVLDLVRNLVKESENIRSSTEYFTSQLQKAQTEIDALKQKLEKSEKDVL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YDALTGCLNRRAFDADLAGMLAQAPEGTCLILVDIDHFKAFNDNYGHQLGDQVLKAVSKR
HHHHHHHHHCCCCCHHHHHHHHCCCCCCEEEEEECHHHHHCCCCCCHHHHHHHHHHHHHH
LQEACRDGCKLYRFGGEEFAIIVPKSQLRIARQLAEAMRRGLEKLSLKDRRKDQRIDNIT
HHHHHHCCHHEEEECCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASFGVAQWQEKQVAIHLIERADMLLYEAKRLGRNRVMPMSN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]