Click here to switch to the map view.

The map label for this gene is rbgA [H]

Identifier: 117920838

GI number: 117920838

Start: 2874207

End: 2875148

Strand: Direct

Name: rbgA [H]

Synonym: Shewana3_2395

Alternate gene names: 117920838

Gene position: 2874207-2875148 (Clockwise)

Preceding gene: 117920837

Following gene: 117920845

Centisome position: 57.81

GC content: 49.68

Gene sequence:

>942_bases
ATGGCAATTCAATGGTATCCGGGGCACATGCACAAGGCACGCAAAGAGATCGAAGAGGCTATGCCTCAGGTCGATCTGGT
GATTGAGGTGCTGGACGCCCGTATTCCCTACAGTAGTGAAAACCCCATGGTGTCAAAGCTTCGCGGCGACAAACCTTGTA
TTAAGCTACTGAATAAATCCGACTTAGCCGATCCTGAGATCACCGCCCAATGGATTGAATACCTTGAACGTGAACAAGGG
GTAAAAGCGACTGCGATAACTACACTGCAACCGGGTATGCTGAAAATGCTGCCGGATCTTTGCCGTAAGTTAGTGCCGAG
TCGCGATAAGACCGAAAAGGACATTCGCACTATGATCATGGGGATCCCAAACGTGGGTAAGTCCACCATTATCAACACCT
TAGCCGGTCGAGTTATCGCCAAAACCGGAAACGAACCCGCCGTCACCAAAAGCCAGCAACGTATTAACCTACGCAACGGC
ATTGTGCTCTCGGACACGCCAGGGATTTTATGGCCTAAAGTCGATAACGAAGCCAGTAGCTATCGTCTCGCCGTCACGGG
TGCCATTAAAGATACCGCCATGGAGTACGAAGATGTGGCACTGTTTGCCGCAGGTTATTTCTTAAAGGCGTACCCGAAGG
AAATTTGCGAGCGTTATAACATCAGCGAATTACCTAAGGATGATATGGCGTTACTCGAAGAAATCGGCCGTAAACGCGGT
GCCCTGCGTCCCGGTGGTCGCATCGATTTACATAAAGCTTCGGAAGTCGTGTTACACGACTATCGCTCTGGTCGAATTGG
CCTATTATCCCTAGAAACTCCAGCAATGGCCGAAATCGAGAAAGCCGAAGTGGAACGTATTCTGGCTGAAAAAGCCGCCG
AGAAAGCCGCTAAGCTAGAAGCGGAAAAACTGAAACGCTCAGGTAAACGACATAACGTTTAA

Upstream 100 bases:

>100_bases
AGATTAAGCAATTAAAGCGCCTTCGGGCGCTTTTTTTATGACATTCGTCGCCTTCAAGGTAGAATAAGCGTCTTTAGGTC
ATTTAGAACAAGGCGCTATC

Downstream 100 bases:

>100_bases
GCGCTGTGTTTAATCACTTTACCCCGTCAATAGCGGGCTAAAGTGGCTCATTAAAGTGATGATTTAGATTAAAAGTCATT
ATTTATATTAAGAATTATCG

Product: ribosomal biogenesis GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 312

Protein sequence:

>313_residues
MAIQWYPGHMHKARKEIEEAMPQVDLVIEVLDARIPYSSENPMVSKLRGDKPCIKLLNKSDLADPEITAQWIEYLEREQG
VKATAITTLQPGMLKMLPDLCRKLVPSRDKTEKDIRTMIMGIPNVGKSTIINTLAGRVIAKTGNEPAVTKSQQRINLRNG
IVLSDTPGILWPKVDNEASSYRLAVTGAIKDTAMEYEDVALFAAGYFLKAYPKEICERYNISELPKDDMALLEEIGRKRG
ALRPGGRIDLHKASEVVLHDYRSGRIGLLSLETPAMAEIEKAEVERILAEKAAEKAAKLEAEKLKRSGKRHNV

Sequences:

>Translated_313_residues
MAIQWYPGHMHKARKEIEEAMPQVDLVIEVLDARIPYSSENPMVSKLRGDKPCIKLLNKSDLADPEITAQWIEYLEREQG
VKATAITTLQPGMLKMLPDLCRKLVPSRDKTEKDIRTMIMGIPNVGKSTIINTLAGRVIAKTGNEPAVTKSQQRINLRNG
IVLSDTPGILWPKVDNEASSYRLAVTGAIKDTAMEYEDVALFAAGYFLKAYPKEICERYNISELPKDDMALLEEIGRKRG
ALRPGGRIDLHKASEVVLHDYRSGRIGLLSLETPAMAEIEKAEVERILAEKAAEKAAKLEAEKLKRSGKRHNV
>Mature_312_residues
AIQWYPGHMHKARKEIEEAMPQVDLVIEVLDARIPYSSENPMVSKLRGDKPCIKLLNKSDLADPEITAQWIEYLEREQGV
KATAITTLQPGMLKMLPDLCRKLVPSRDKTEKDIRTMIMGIPNVGKSTIINTLAGRVIAKTGNEPAVTKSQQRINLRNGI
VLSDTPGILWPKVDNEASSYRLAVTGAIKDTAMEYEDVALFAAGYFLKAYPKEICERYNISELPKDDMALLEEIGRKRGA
LRPGGRIDLHKASEVVLHDYRSGRIGLLSLETPAMAEIEKAEVERILAEKAAEKAAKLEAEKLKRSGKRHNV

Specific function: Binds GTP and GDP [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI93277113, Length=210, Percent_Identity=33.3333333333333, Blast_Score=115, Evalue=7e-26,
Organism=Homo sapiens, GI7019419, Length=258, Percent_Identity=28.2945736434109, Blast_Score=96, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17534827, Length=283, Percent_Identity=31.095406360424, Blast_Score=101, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI193211047, Length=216, Percent_Identity=31.0185185185185, Blast_Score=97, Evalue=9e-21,
Organism=Caenorhabditis elegans, GI32563985, Length=274, Percent_Identity=27.3722627737226, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI71990926, Length=274, Percent_Identity=27.3722627737226, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI32563983, Length=274, Percent_Identity=27.3722627737226, Blast_Score=85, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6324381, Length=271, Percent_Identity=28.7822878228782, Blast_Score=92, Evalue=7e-20,
Organism=Saccharomyces cerevisiae, GI6320842, Length=305, Percent_Identity=29.5081967213115, Blast_Score=88, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6323744, Length=237, Percent_Identity=30.379746835443, Blast_Score=74, Evalue=4e-14,
Organism=Drosophila melanogaster, GI85815858, Length=303, Percent_Identity=29.7029702970297, Blast_Score=120, Evalue=1e-27,
Organism=Drosophila melanogaster, GI19922460, Length=296, Percent_Identity=27.3648648648649, Blast_Score=91, Evalue=7e-19,
Organism=Drosophila melanogaster, GI28572990, Length=283, Percent_Identity=27.9151943462898, Blast_Score=89, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 34953; Mature: 34822

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIQWYPGHMHKARKEIEEAMPQVDLVIEVLDARIPYSSENPMVSKLRGDKPCIKLLNKS
CEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHCCC
DLADPEITAQWIEYLEREQGVKATAITTLQPGMLKMLPDLCRKLVPSRDKTEKDIRTMIM
CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
GIPNVGKSTIINTLAGRVIAKTGNEPAVTKSQQRINLRNGIVLSDTPGILWPKVDNEASS
CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCEEEECCCCEECCCCCCCCCC
YRLAVTGAIKDTAMEYEDVALFAAGYFLKAYPKEICERYNISELPKDDMALLEEIGRKRG
EEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC
ALRPGGRIDLHKASEVVLHDYRSGRIGLLSLETPAMAEIEKAEVERILAEKAAEKAAKLE
CCCCCCCEEHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AEKLKRSGKRHNV
HHHHHHCCCCCCC
>Mature Secondary Structure 
AIQWYPGHMHKARKEIEEAMPQVDLVIEVLDARIPYSSENPMVSKLRGDKPCIKLLNKS
EEECCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHCCC
DLADPEITAQWIEYLEREQGVKATAITTLQPGMLKMLPDLCRKLVPSRDKTEKDIRTMIM
CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
GIPNVGKSTIINTLAGRVIAKTGNEPAVTKSQQRINLRNGIVLSDTPGILWPKVDNEASS
CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCEEEECCCCEECCCCCCCCCC
YRLAVTGAIKDTAMEYEDVALFAAGYFLKAYPKEICERYNISELPKDDMALLEEIGRKRG
EEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC
ALRPGGRIDLHKASEVVLHDYRSGRIGLLSLETPAMAEIEKAEVERILAEKAAEKAAKLE
CCCCCCCEEHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AEKLKRSGKRHNV
HHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]