| Definition | Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008577 |
| Length | 4,972,204 |
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The map label for this gene is 117920755
Identifier: 117920755
GI number: 117920755
Start: 2780573
End: 2783398
Strand: Direct
Name: 117920755
Synonym: Shewana3_2312
Alternate gene names: NA
Gene position: 2780573-2783398 (Clockwise)
Preceding gene: 117920750
Following gene: 117920756
Centisome position: 55.92
GC content: 45.51
Gene sequence:
>2826_bases ATGATGCGATTTAAACCCAGCTTGCTGACCTTAGCACTCGTTGCTGCTGGCGCCAGTATGCACTCCTACGCAGCAGATGA TGTAAAAGAAAAAGACCTAAAAGCCAAAGATGCCGAAATTGAAGTAATCCAAGTTAAAGGCTTCAGAACCAGTGTGATCA AATCGCTTAATGAAAAACGTTTTGGCGATACCGTATCTGAATCTATCTCTGCCGACGATCTCGGCGCCCTGCCCGACCAA TCTATCGCCGATGCGTTAACCCGTTTACCGGGCGTGACCGCTGTTCGTACTGGCGGTCAAGCCAGTGGGCTGAATATCCG TGGTCTGGATGGCGATTTCGTGTTTGCCACCCTCAATGGCCACGAACAAGTGACCACTGGCGGTAAACGCGCCATTGAGT TTGACCAATATCCATCTGAATTAATCAGTCAAGCGGCAGTTTATAAAACCCCGAAAGCCTCGCTGATCGAAGGCGGCGTG GCCGGTACGGTTGAATTAAAAACCGCCGATCCGCTAAAGAATGACAAAGACCAATCATTCAATATCAATGCCCGTGGCAG CTTTAACGATCGCGCCGATGAAATCTCCGATGCCGAGCAATACGGCAATCGTTTAAGTCTTGCTTATCAAGGTAAATTCC TCGAAGACACCTTAGGGGTTGCAGTGGGCTATGCTCACCTGTATCAACCTTATGTTGCGAGCCAATTCATTGGCTTACGT TTTAATGATGACAAAAAAGACGTTAACGGTGACGGTGTAACCGAAGCGATCAGTGAAGGTTTTGAACTGCAACAAAAAGG CGGCGACGACACCCGTGATGGCTATATGGCGGCTATTCATTGGCAACCGAGTGATAGCCTGAGTGTGAAAGGCGATCTGT TCCACTCTAAATTTACCTCTGAAAACTTTGCCCGTGGTTTCCGCGTGAAATCATTGAAAAATGGCACCATCAGTGATGCC GTTGTCGAAAATGGTTCTATGACTGGTGGTACTGTTTCTGTAGGTACCGATAGTACTGATGACTTTTCTATTTTCGTAAT AAACGATAATGACTCCAAGTACTCAGAATTGACTTCAGGCTCTATAAACCTTGAGTGGAATAATGGCGGCGCACTGACAG TGGCGGCCGATGTCAGCTATTCCAAAGCCGATGGTGAATTCGTTAACGGTGGCACCCGCGCTATATTATACGATGACATT GGTAATGAAGTACGCTCAGCTGAATCAGTTACTTATCAACTGAATGGCTTAAGTCCTGCGGATGTCAGCTTTACTAACGA CTACACCAATACCTCGACCCTAGGTCTAAAAGAAGTGGGTATGTGGCCCTATAATCAGCAAAACGATCTGATTGCCTACA AACTCGATTTTAACTATGTCCTAGACACCAGCTTTGTCTCTTCTGTTGATTTTGGTGTGCGTTATGCTGAGCGCGAGTTT AATGCCCAACGTTCACAGGCAGGTTACGGTTTTGAATATGATAAAAATCCAAGTAACCAACCAGTCCTCGCACTTAACGG CGATATGGCCAAAGTGGTTGATTTTGGAGGAGAACTCTCAGGTTACCCAAGTTTCCTCGCCATTGACTTTAATAAAGCAC TTGAGTTGGTAAATGCACAACTGGCAGCAACTGGCCAATCACCCTTCACCCCCACGGCGAACTGGTCAAATAACTGGACC ATGATCCAAAGCGGCGCGGTCAATGAAGATGTATTAGCTGGCTACGTGCAGGCAAATTTAGACTTTGATATTGGTGACGT TAAAGTCACAGGTAACCTGGGTGTGAGAGTGGTACACACAGATCAAAGCAGTACAGGTCTGCAACAGGTAGGTTATGGTT TAGGTGAAGCTATTACCGATGAGCAAGGTGTCGTGAGCACGGATTATATCCGCAATGAAGTTGGTCAAACCTATACCGAT TACCTGCCATCACTGAACTTGACCTTCCACCTGACTGAAAACGATCAACTGCGTTTTGCTGCAGCCTCTGTGATGTCACG TCCTCCGATTAACAAGTTAAAGTCGGGTATGGGATCTTGGTACGATAATGCCTCCACAGAAGGATATAAAAAGTACAATG CATGGGGTAACACCAGTCCGTTATTAGATCCTTTCTATGCGGATCAATATGACTTGTCCTACGAGCACTACTTTGAAGAG TCTGAAGGTGCGGTCGTTATTGCCTTGTTCTATAAAGATATTAAATCTTTCATCAACGACTTCACCATTCAAAACTACGA TTTTGAAGCGAATGGCTTTATCGTGCCCGATACCATTATCGACAATGGCGTTGAATTCCCAGTTGTAAAAAATGAAGGGC AATATCAAACAGCCATCAACAATGACAACGGCGGTTATATCCGTGGTATCGAGTTAGGCTATACCCAAGTGTTTGATTTC CTACCGTCACCTTTAGATGGTTTAGGTTTCACTGGTAGCTATTCCTATTCAGACAGCGAAGTCGAATTCACCACAGACTT AAGCGGTTCTAACCTGACCATTCCATTACCAGGTCTGTCTGAAAACGTGCTGAACACTACCCTGTTCTACACCTTGGATG GTTTCGATACCCGTGTGAGCATGAGATACCGTAGTGGCTATGTATCAGAGCAAGTGGCGGTTGAATCTCAACTGGCATTC TTCGATGCGGAAACGATTGTGGATTATCAGGCCTCTTATGCGCTGGATAATGGCCTAAAGTTCCTGTTCCAAATCAATAA CCTCACCGATGAACCGAGCAAAACTTACTTTGGTGAAGAGCATCAAACCGGGACAATTCAATACTTCGGTAGACAATATT TCCTTGGTTTAACCTACTCTCTGTAA
Upstream 100 bases:
>100_bases AAGCGCCGAAATACCAAAAAAAGGCCGCAAAAACAATGCGGTAATAACGATAAAACGCTCTACATAAGCGGTAAAAAGCG ACTTCAAGGGGAAGATAGAA
Downstream 100 bases:
>100_bases GCTGTCATCGTAAAAGCCTGTTTCACTGTGAAGCAGGCTTTTCTTTTTACCCATAATAATAGTGAGATGATACGCCGCTC TTTATTTCTAAAGTCACACT
Product: TonB-dependent receptor
Products: NA
Alternate protein names: Nb-Dependent Receptor; NB-Dependent Receptor Subfamily; NB-Dependent Receptor Plug; NB-Dependent Outer Membrane Receptor; Nb-Dependent Outer Membrane Receptor Protein; Outer Membrane Protein; NB-Dependent Outer Membrane Receptor Protein; Outer Membrane Insertion C-Terminal Signal; NB Dependent Receptor-Related Protein; NB Dependent Receptor; NB-Dependent Receptor Protein; NB-Dependent Receptor Subfamily Protein; Nucleoside Diphosphate Kinase; Crossover Junction Endodeoxyribonuclease RuvC; NB-Dependent Receptor-Like Protein; NB-Dependent Maltose Outer Membrane Transporter MalA; NB Dependent Receptor For Iron Chelates; 50S Ribosomal Protein L; NB-Dependent Outer Membrane Ferripyoverdine Receptor; 3-Dehydroquinate Synthase; DEAD/DEAH Box Helicase-Like; NB Dependent Receptor Protein; NB Domain-Containing Protein; 1-(5-Phosphoribosyl)-5-; Rhodanese-Like Protein; Argininosuccinate Synthase; NB-Dependent Receptor Domain Protein
Number of amino acids: Translated: 941; Mature: 941
Protein sequence:
>941_residues MMRFKPSLLTLALVAAGASMHSYAADDVKEKDLKAKDAEIEVIQVKGFRTSVIKSLNEKRFGDTVSESISADDLGALPDQ SIADALTRLPGVTAVRTGGQASGLNIRGLDGDFVFATLNGHEQVTTGGKRAIEFDQYPSELISQAAVYKTPKASLIEGGV AGTVELKTADPLKNDKDQSFNINARGSFNDRADEISDAEQYGNRLSLAYQGKFLEDTLGVAVGYAHLYQPYVASQFIGLR FNDDKKDVNGDGVTEAISEGFELQQKGGDDTRDGYMAAIHWQPSDSLSVKGDLFHSKFTSENFARGFRVKSLKNGTISDA VVENGSMTGGTVSVGTDSTDDFSIFVINDNDSKYSELTSGSINLEWNNGGALTVAADVSYSKADGEFVNGGTRAILYDDI GNEVRSAESVTYQLNGLSPADVSFTNDYTNTSTLGLKEVGMWPYNQQNDLIAYKLDFNYVLDTSFVSSVDFGVRYAEREF NAQRSQAGYGFEYDKNPSNQPVLALNGDMAKVVDFGGELSGYPSFLAIDFNKALELVNAQLAATGQSPFTPTANWSNNWT MIQSGAVNEDVLAGYVQANLDFDIGDVKVTGNLGVRVVHTDQSSTGLQQVGYGLGEAITDEQGVVSTDYIRNEVGQTYTD YLPSLNLTFHLTENDQLRFAAASVMSRPPINKLKSGMGSWYDNASTEGYKKYNAWGNTSPLLDPFYADQYDLSYEHYFEE SEGAVVIALFYKDIKSFINDFTIQNYDFEANGFIVPDTIIDNGVEFPVVKNEGQYQTAINNDNGGYIRGIELGYTQVFDF LPSPLDGLGFTGSYSYSDSEVEFTTDLSGSNLTIPLPGLSENVLNTTLFYTLDGFDTRVSMRYRSGYVSEQVAVESQLAF FDAETIVDYQASYALDNGLKFLFQINNLTDEPSKTYFGEEHQTGTIQYFGRQYFLGLTYSL
Sequences:
>Translated_941_residues MMRFKPSLLTLALVAAGASMHSYAADDVKEKDLKAKDAEIEVIQVKGFRTSVIKSLNEKRFGDTVSESISADDLGALPDQ SIADALTRLPGVTAVRTGGQASGLNIRGLDGDFVFATLNGHEQVTTGGKRAIEFDQYPSELISQAAVYKTPKASLIEGGV AGTVELKTADPLKNDKDQSFNINARGSFNDRADEISDAEQYGNRLSLAYQGKFLEDTLGVAVGYAHLYQPYVASQFIGLR FNDDKKDVNGDGVTEAISEGFELQQKGGDDTRDGYMAAIHWQPSDSLSVKGDLFHSKFTSENFARGFRVKSLKNGTISDA VVENGSMTGGTVSVGTDSTDDFSIFVINDNDSKYSELTSGSINLEWNNGGALTVAADVSYSKADGEFVNGGTRAILYDDI GNEVRSAESVTYQLNGLSPADVSFTNDYTNTSTLGLKEVGMWPYNQQNDLIAYKLDFNYVLDTSFVSSVDFGVRYAEREF NAQRSQAGYGFEYDKNPSNQPVLALNGDMAKVVDFGGELSGYPSFLAIDFNKALELVNAQLAATGQSPFTPTANWSNNWT MIQSGAVNEDVLAGYVQANLDFDIGDVKVTGNLGVRVVHTDQSSTGLQQVGYGLGEAITDEQGVVSTDYIRNEVGQTYTD YLPSLNLTFHLTENDQLRFAAASVMSRPPINKLKSGMGSWYDNASTEGYKKYNAWGNTSPLLDPFYADQYDLSYEHYFEE SEGAVVIALFYKDIKSFINDFTIQNYDFEANGFIVPDTIIDNGVEFPVVKNEGQYQTAINNDNGGYIRGIELGYTQVFDF LPSPLDGLGFTGSYSYSDSEVEFTTDLSGSNLTIPLPGLSENVLNTTLFYTLDGFDTRVSMRYRSGYVSEQVAVESQLAF FDAETIVDYQASYALDNGLKFLFQINNLTDEPSKTYFGEEHQTGTIQYFGRQYFLGLTYSL >Mature_941_residues MMRFKPSLLTLALVAAGASMHSYAADDVKEKDLKAKDAEIEVIQVKGFRTSVIKSLNEKRFGDTVSESISADDLGALPDQ SIADALTRLPGVTAVRTGGQASGLNIRGLDGDFVFATLNGHEQVTTGGKRAIEFDQYPSELISQAAVYKTPKASLIEGGV AGTVELKTADPLKNDKDQSFNINARGSFNDRADEISDAEQYGNRLSLAYQGKFLEDTLGVAVGYAHLYQPYVASQFIGLR FNDDKKDVNGDGVTEAISEGFELQQKGGDDTRDGYMAAIHWQPSDSLSVKGDLFHSKFTSENFARGFRVKSLKNGTISDA VVENGSMTGGTVSVGTDSTDDFSIFVINDNDSKYSELTSGSINLEWNNGGALTVAADVSYSKADGEFVNGGTRAILYDDI GNEVRSAESVTYQLNGLSPADVSFTNDYTNTSTLGLKEVGMWPYNQQNDLIAYKLDFNYVLDTSFVSSVDFGVRYAEREF NAQRSQAGYGFEYDKNPSNQPVLALNGDMAKVVDFGGELSGYPSFLAIDFNKALELVNAQLAATGQSPFTPTANWSNNWT MIQSGAVNEDVLAGYVQANLDFDIGDVKVTGNLGVRVVHTDQSSTGLQQVGYGLGEAITDEQGVVSTDYIRNEVGQTYTD YLPSLNLTFHLTENDQLRFAAASVMSRPPINKLKSGMGSWYDNASTEGYKKYNAWGNTSPLLDPFYADQYDLSYEHYFEE SEGAVVIALFYKDIKSFINDFTIQNYDFEANGFIVPDTIIDNGVEFPVVKNEGQYQTAINNDNGGYIRGIELGYTQVFDF LPSPLDGLGFTGSYSYSDSEVEFTTDLSGSNLTIPLPGLSENVLNTTLFYTLDGFDTRVSMRYRSGYVSEQVAVESQLAF FDAETIVDYQASYALDNGLKFLFQINNLTDEPSKTYFGEEHQTGTIQYFGRQYFLGLTYSL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 103016; Mature: 103016
Theoretical pI: Translated: 4.14; Mature: 4.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMRFKPSLLTLALVAAGASMHSYAADDVKEKDLKAKDAEIEVIQVKGFRTSVIKSLNEKR CCCCCCHHHHHHHHHCCCHHHHHHHCCHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHH FGDTVSESISADDLGALPDQSIADALTRLPGVTAVRTGGQASGLNIRGLDGDFVFATLNG CCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCEEEECCCCEEEEEECC HEQVTTGGKRAIEFDQYPSELISQAAVYKTPKASLIEGGVAGTVELKTADPLKNDKDQSF CCEECCCCCEEEECCCCHHHHHHHHHHHCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCE NINARGSFNDRADEISDAEQYGNRLSLAYQGKFLEDTLGVAVGYAHLYQPYVASQFIGLR EEEECCCCCCCHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHCHHHHHHEEEEE FNDDKKDVNGDGVTEAISEGFELQQKGGDDTRDGYMAAIHWQPSDSLSVKGDLFHSKFTS ECCCCCCCCCCCHHHHHHCCCEEHHCCCCCCCCCEEEEEEECCCCCCEEECCHHHHHCCC ENFARGFRVKSLKNGTISDAVVENGSMTGGTVSVGTDSTDDFSIFVINDNDSKYSELTSG CHHHCCEEEEECCCCCCCHHHCCCCCCCCCEEEECCCCCCCEEEEEEECCCCHHHHHCCC SINLEWNNGGALTVAADVSYSKADGEFVNGGTRAILYDDIGNEVRSAESVTYQLNGLSPA EEEEEECCCCEEEEEEECCCCCCCCCEECCCEEEEEECCCCCHHHCCCEEEEEECCCCCC DVSFTNDYTNTSTLGLKEVGMWPYNQQNDLIAYKLDFNYVLDTSFVSSVDFGVRYAEREF CCEECCCCCCCCCCCHHHHCCCCCCCCCCEEEEEEECCEEECCHHHHHHHHHHHHHHHHH NAQRSQAGYGFEYDKNPSNQPVLALNGDMAKVVDFGGELSGYPSFLAIDFNKALELVNAQ CCHHHCCCCCCEECCCCCCCCEEEECCCCEEEHHCCCCCCCCCCEEEEEHHHHHHHHHHH LAATGQSPFTPTANWSNNWTMIQSGAVNEDVLAGYVQANLDFDIGDVKVTGNLGVRVVHT EEECCCCCCCCCCCCCCCEEEEECCCCCHHHHEEEEEEECCCCCCCEEEECCCCEEEEEC DQSSTGLQQVGYGLGEAITDEQGVVSTDYIRNEVGQTYTDYLPSLNLTFHLTENDQLRFA CCCCCCHHHHCCCCCCCCCCCCCCEEHHHHHHHHCCHHHHHCCCCEEEEEECCCCCEEHH AASVMSRPPINKLKSGMGSWYDNASTEGYKKYNAWGNTSPLLDPFYADQYDLSYEHYFEE HHHHHCCCCHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHCC SEGAVVIALFYKDIKSFINDFTIQNYDFEANGFIVPDTIIDNGVEFPVVKNEGQYQTAIN CCCCEEEEEHHHHHHHHHHHCEEECCCCCCCCEECCHHHHCCCCCCEEEECCCCEEEEEE NDNGGYIRGIELGYTQVFDFLPSPLDGLGFTGSYSYSDSEVEFTTDLSGSNLTIPLPGLS CCCCCEEEEEECCHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCC ENVLNTTLFYTLDGFDTRVSMRYRSGYVSEQVAVESQLAFFDAETIVDYQASYALDNGLK CCCCCEEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHEEEHHHHHHHHHHHHHCCCEE FLFQINNLTDEPSKTYFGEEHQTGTIQYFGRQYFLGLTYSL EEEEECCCCCCCCCCCCCCCCCCCEEEEECCEEEEEEEECC >Mature Secondary Structure MMRFKPSLLTLALVAAGASMHSYAADDVKEKDLKAKDAEIEVIQVKGFRTSVIKSLNEKR CCCCCCHHHHHHHHHCCCHHHHHHHCCHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHH FGDTVSESISADDLGALPDQSIADALTRLPGVTAVRTGGQASGLNIRGLDGDFVFATLNG CCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCEEEECCCCEEEEEECC HEQVTTGGKRAIEFDQYPSELISQAAVYKTPKASLIEGGVAGTVELKTADPLKNDKDQSF CCEECCCCCEEEECCCCHHHHHHHHHHHCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCE NINARGSFNDRADEISDAEQYGNRLSLAYQGKFLEDTLGVAVGYAHLYQPYVASQFIGLR EEEECCCCCCCHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHCHHHHHHEEEEE FNDDKKDVNGDGVTEAISEGFELQQKGGDDTRDGYMAAIHWQPSDSLSVKGDLFHSKFTS ECCCCCCCCCCCHHHHHHCCCEEHHCCCCCCCCCEEEEEEECCCCCCEEECCHHHHHCCC ENFARGFRVKSLKNGTISDAVVENGSMTGGTVSVGTDSTDDFSIFVINDNDSKYSELTSG CHHHCCEEEEECCCCCCCHHHCCCCCCCCCEEEECCCCCCCEEEEEEECCCCHHHHHCCC SINLEWNNGGALTVAADVSYSKADGEFVNGGTRAILYDDIGNEVRSAESVTYQLNGLSPA EEEEEECCCCEEEEEEECCCCCCCCCEECCCEEEEEECCCCCHHHCCCEEEEEECCCCCC DVSFTNDYTNTSTLGLKEVGMWPYNQQNDLIAYKLDFNYVLDTSFVSSVDFGVRYAEREF CCEECCCCCCCCCCCHHHHCCCCCCCCCCEEEEEEECCEEECCHHHHHHHHHHHHHHHHH NAQRSQAGYGFEYDKNPSNQPVLALNGDMAKVVDFGGELSGYPSFLAIDFNKALELVNAQ CCHHHCCCCCCEECCCCCCCCEEEECCCCEEEHHCCCCCCCCCCEEEEEHHHHHHHHHHH LAATGQSPFTPTANWSNNWTMIQSGAVNEDVLAGYVQANLDFDIGDVKVTGNLGVRVVHT EEECCCCCCCCCCCCCCCEEEEECCCCCHHHHEEEEEEECCCCCCCEEEECCCCEEEEEC DQSSTGLQQVGYGLGEAITDEQGVVSTDYIRNEVGQTYTDYLPSLNLTFHLTENDQLRFA CCCCCCHHHHCCCCCCCCCCCCCCEEHHHHHHHHCCHHHHHCCCCEEEEEECCCCCEEHH AASVMSRPPINKLKSGMGSWYDNASTEGYKKYNAWGNTSPLLDPFYADQYDLSYEHYFEE HHHHHCCCCHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHCC SEGAVVIALFYKDIKSFINDFTIQNYDFEANGFIVPDTIIDNGVEFPVVKNEGQYQTAIN CCCCEEEEEHHHHHHHHHHHCEEECCCCCCCCEECCHHHHCCCCCCEEEECCCCEEEEEE NDNGGYIRGIELGYTQVFDFLPSPLDGLGFTGSYSYSDSEVEFTTDLSGSNLTIPLPGLS CCCCCEEEEEECCHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCC ENVLNTTLFYTLDGFDTRVSMRYRSGYVSEQVAVESQLAFFDAETIVDYQASYALDNGLK CCCCCEEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHEEEHHHHHHHHHHHHHCCCEE FLFQINNLTDEPSKTYFGEEHQTGTIQYFGRQYFLGLTYSL EEEEECCCCCCCCCCCCCCCCCCCEEEEECCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA