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The map label for this gene is rsmB [H]

Identifier: 117920752

GI number: 117920752

Start: 2775688

End: 2776902

Strand: Reverse

Name: rsmB [H]

Synonym: Shewana3_2309

Alternate gene names: 117920752

Gene position: 2776902-2775688 (Counterclockwise)

Preceding gene: 117920753

Following gene: 117920751

Centisome position: 55.85

GC content: 51.11

Gene sequence:

>1215_bases
ATGTTGAATTCTCCGCTTTCTGCCAGCTCGAATGAATTAGTGATCAGTATCTTAGCTATGGTGCTAAGCGAAGGAAAACC
CTTAGACCGGGCCTATTCTCAGCATTTTTCGGGATTAAAGTTAGTACCCGCCGAACAGGCGCGTATTGCCACTGTGACCG
GCGATATTCTGCGCCGGTTAAATCTGTATTGTTTCTTAGCCGAAATTAAGCCGGAAGAAATGGAGCGCTTAGGCTCTAAG
CTGCTTAATGTGTGGCACTTATTCCACAACTTAGAACTGCCTAAAATGCAGTATTCGTTGCCGGTCGATGCCGAGCGTTT
AGCCGAGCGTATCGAACAGGCTAAGAACCAACCTGTGCTTTGGGACGGTTGCCCAGAATGGTTAGATGCAATGGGTCAAG
CCCAACTTGCGGCATCCTGGGAGAAGGAGCGCGCCGCCTTAAGCACTCCGCCAAAGCGTTTCCTGCGGGTCAATGGCCTT
AAAGTGACTCGTGATGATTTAGCGCAAAAACTGGCGGCCGAGTTTGTCACCACCCAAGCGGTCGAGGGCGTTGATTCAGC
CCTTGAAGTGACCTCTGATTCCGCGCTGTTTCGCACTAACTGCTTTAAAGATGGATTATTTGAGCAGCAAGATGCGGGCT
CGCAACGTGTGGCCGCGGCGCTCGATGCCAAACCGGGCATGCGAGTGATTGATGCCTGCGCTGGCGCAGGGGGCAAGACC
TTACATATCGCCGCGCAGATGCAGGGCAAAGGCCGTTTATTGGCGATGGATGTGGAGCAATGGAAACTCGACAACCTTAA
AGAACGCGCTCGCCGTAATGGTGCCCACAATATCGAAACCCGATTAATTGTCGGCTCAAAAACCATCAAACGCTTAAAGC
TCAGTGCCGATCGTGTGCTGCTCGATGTGCCTTGCTCAGGCCTTGGGGTATTAAAGCGCAATCCCGATGCCAAATGGCGT
GATACTGCCGAACGTTTGCCAGTACTGATGGAGCTGCAAAAGCATATCTTAAGCAGCTATAGTCGCATGGTGAAGGTGGG
TGGCATTGTGGTGTACGCGACCTGCTCAATTTTCCCCTGTGAAAACCGCGGCCAAGTGGATGCTTTCTTAGCGGAAAACC
CCAATTTCCGTTTACTCGAAGATGAAACCATCAGCCCCGCCGAAACGGGTTTCGATGGGTTTTATTTAGCAAAACTTGAG
CGAATTCAAGAATAA

Upstream 100 bases:

>100_bases
ACTTTTTTGCCTCTAAAAGGCAACAGCGCATCTGTTTACTTGCGTATTAGTGCCTGACCTCCTATGATCCCCCGGTTTTA
TTACTCACGGTGACCTGTAA

Downstream 100 bases:

>100_bases
ACCCGCATTTTACTCGCCACTAAAGCAGGTTTTCATCCATCATTGAAAAGTTGCTTTAGTGCGACTAAATACCTAAAATT
CACCCCTGATTTACAAAGAT

Product: Fmu (Sun) domain-containing protein

Products: NA

Alternate protein names: rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 404; Mature: 404

Protein sequence:

>404_residues
MLNSPLSASSNELVISILAMVLSEGKPLDRAYSQHFSGLKLVPAEQARIATVTGDILRRLNLYCFLAEIKPEEMERLGSK
LLNVWHLFHNLELPKMQYSLPVDAERLAERIEQAKNQPVLWDGCPEWLDAMGQAQLAASWEKERAALSTPPKRFLRVNGL
KVTRDDLAQKLAAEFVTTQAVEGVDSALEVTSDSALFRTNCFKDGLFEQQDAGSQRVAAALDAKPGMRVIDACAGAGGKT
LHIAAQMQGKGRLLAMDVEQWKLDNLKERARRNGAHNIETRLIVGSKTIKRLKLSADRVLLDVPCSGLGVLKRNPDAKWR
DTAERLPVLMELQKHILSSYSRMVKVGGIVVYATCSIFPCENRGQVDAFLAENPNFRLLEDETISPAETGFDGFYLAKLE
RIQE

Sequences:

>Translated_404_residues
MLNSPLSASSNELVISILAMVLSEGKPLDRAYSQHFSGLKLVPAEQARIATVTGDILRRLNLYCFLAEIKPEEMERLGSK
LLNVWHLFHNLELPKMQYSLPVDAERLAERIEQAKNQPVLWDGCPEWLDAMGQAQLAASWEKERAALSTPPKRFLRVNGL
KVTRDDLAQKLAAEFVTTQAVEGVDSALEVTSDSALFRTNCFKDGLFEQQDAGSQRVAAALDAKPGMRVIDACAGAGGKT
LHIAAQMQGKGRLLAMDVEQWKLDNLKERARRNGAHNIETRLIVGSKTIKRLKLSADRVLLDVPCSGLGVLKRNPDAKWR
DTAERLPVLMELQKHILSSYSRMVKVGGIVVYATCSIFPCENRGQVDAFLAENPNFRLLEDETISPAETGFDGFYLAKLE
RIQE
>Mature_404_residues
MLNSPLSASSNELVISILAMVLSEGKPLDRAYSQHFSGLKLVPAEQARIATVTGDILRRLNLYCFLAEIKPEEMERLGSK
LLNVWHLFHNLELPKMQYSLPVDAERLAERIEQAKNQPVLWDGCPEWLDAMGQAQLAASWEKERAALSTPPKRFLRVNGL
KVTRDDLAQKLAAEFVTTQAVEGVDSALEVTSDSALFRTNCFKDGLFEQQDAGSQRVAAALDAKPGMRVIDACAGAGGKT
LHIAAQMQGKGRLLAMDVEQWKLDNLKERARRNGAHNIETRLIVGSKTIKRLKLSADRVLLDVPCSGLGVLKRNPDAKWR
DTAERLPVLMELQKHILSSYSRMVKVGGIVVYATCSIFPCENRGQVDAFLAENPNFRLLEDETISPAETGFDGFYLAKLE
RIQE

Specific function: Unknown

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI32698918, Length=185, Percent_Identity=31.8918918918919, Blast_Score=97, Evalue=4e-20,
Organism=Homo sapiens, GI76150625, Length=278, Percent_Identity=29.4964028776978, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI76150623, Length=278, Percent_Identity=29.4964028776978, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI270288818, Length=293, Percent_Identity=27.6450511945392, Blast_Score=79, Evalue=9e-15,
Organism=Homo sapiens, GI23199998, Length=293, Percent_Identity=27.6450511945392, Blast_Score=79, Evalue=9e-15,
Organism=Homo sapiens, GI8922322, Length=293, Percent_Identity=27.6450511945392, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI270288816, Length=293, Percent_Identity=27.6450511945392, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI39995082, Length=184, Percent_Identity=27.7173913043478, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI301336155, Length=184, Percent_Identity=27.7173913043478, Blast_Score=67, Evalue=3e-11,
Organism=Escherichia coli, GI2367212, Length=290, Percent_Identity=31.0344827586207, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI87081985, Length=289, Percent_Identity=28.3737024221453, Blast_Score=94, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17536757, Length=278, Percent_Identity=28.7769784172662, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI71998419, Length=304, Percent_Identity=26.9736842105263, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI115534021, Length=225, Percent_Identity=28, Blast_Score=69, Evalue=4e-12,
Organism=Saccharomyces cerevisiae, GI6324268, Length=281, Percent_Identity=28.8256227758007, Blast_Score=97, Evalue=6e-21,
Organism=Saccharomyces cerevisiae, GI6319447, Length=178, Percent_Identity=29.2134831460674, Blast_Score=67, Evalue=4e-12,
Organism=Drosophila melanogaster, GI22024126, Length=279, Percent_Identity=27.9569892473118, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI21355201, Length=175, Percent_Identity=32, Blast_Score=80, Evalue=3e-15,
Organism=Drosophila melanogaster, GI19920494, Length=165, Percent_Identity=33.3333333333333, Blast_Score=72, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 44883; Mature: 44883

Theoretical pI: Translated: 7.44; Mature: 7.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNSPLSASSNELVISILAMVLSEGKPLDRAYSQHFSGLKLVPAEQARIATVTGDILRRL
CCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEECCCCCEEEHHHHHHHHHH
NLYCFLAEIKPEEMERLGSKLLNVWHLFHNLELPKMQYSLPVDAERLAERIEQAKNQPVL
HHEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCEE
WDGCPEWLDAMGQAQLAASWEKERAALSTPPKRFLRVNGLKVTRDDLAQKLAAEFVTTQA
ECCCHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHEEECCCEECHHHHHHHHHHHHHHHHH
VEGVDSALEVTSDSALFRTNCFKDGLFEQQDAGSQRVAAALDAKPGMRVIDACAGAGGKT
HHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHCCCCCCE
LHIAAQMQGKGRLLAMDVEQWKLDNLKERARRNGAHNIETRLIVGSKTIKRLKLSADRVL
EEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHCCCEEE
LDVPCSGLGVLKRNPDAKWRDTAERLPVLMELQKHILSSYSRMVKVGGIVVYATCSIFPC
EECCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEEC
ENRGQVDAFLAENPNFRLLEDETISPAETGFDGFYLAKLERIQE
CCCCCEEEEEECCCCEEEEECCCCCCHHCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MLNSPLSASSNELVISILAMVLSEGKPLDRAYSQHFSGLKLVPAEQARIATVTGDILRRL
CCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEECCCCCEEEHHHHHHHHHH
NLYCFLAEIKPEEMERLGSKLLNVWHLFHNLELPKMQYSLPVDAERLAERIEQAKNQPVL
HHEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCEE
WDGCPEWLDAMGQAQLAASWEKERAALSTPPKRFLRVNGLKVTRDDLAQKLAAEFVTTQA
ECCCHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHEEECCCEECHHHHHHHHHHHHHHHHH
VEGVDSALEVTSDSALFRTNCFKDGLFEQQDAGSQRVAAALDAKPGMRVIDACAGAGGKT
HHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHCCCCCCE
LHIAAQMQGKGRLLAMDVEQWKLDNLKERARRNGAHNIETRLIVGSKTIKRLKLSADRVL
EEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHCCCEEE
LDVPCSGLGVLKRNPDAKWRDTAERLPVLMELQKHILSSYSRMVKVGGIVVYATCSIFPC
EECCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEEC
ENRGQVDAFLAENPNFRLLEDETISPAETGFDGFYLAKLERIQE
CCCCCEEEEEECCCCEEEEECCCCCCHHCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]