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The map label for this gene is yedY [H]

Identifier: 117920677

GI number: 117920677

Start: 2685968

End: 2687002

Strand: Reverse

Name: yedY [H]

Synonym: Shewana3_2234

Alternate gene names: 117920677

Gene position: 2687002-2685968 (Counterclockwise)

Preceding gene: 117920695

Following gene: 117920676

Centisome position: 54.04

GC content: 51.4

Gene sequence:

>1035_bases
TTGGCTAATCAATCACGTTTTACACCGGGTATTTTGAAAAAAGCGCGCTGGCATATCCAAGATAATCAAGTGACACCCGA
GTCGGTGTTTAAGGCCCGCCGCCATATAGTCAAAGCCATGGGCCTTGGCGCGATTGGGGCCAGCATTCCGGGTTATGTGC
AGGCGGGATTATTCGATCTGTTTGGCGAACAACCCAAAACCAGCTTTATCACTACGCCATTGACCTTTGAGGCCAATGTC
CGCTTTGGTAAGGACGAAGTGCTGACACCCGTGGATAAGGTCACCACCCACAATAACTTTTACGAGTTTGGTACCAGCAA
GCAGGATCCGTCTGATAACGCCCAGCAGTTTAAGGTCGACCCTTGGCAATTACGTATCGAAGGTGAAGTGGAGCGCCCGA
TGACGCTCGATTATCAAGATCTCACTAAGCTATTTCCTCTGGAAGAACGCATATACCGCCTGCGCTGCGTCGAAGCTTGG
TCCATGGTGATCCCTTGGGTAGGCTTTCCACTCGCCGCTTTATTGAAAAAAGTCGGCGTGACCAGTAAAGGCAAGTATGT
TGCCTTTGAAACCGCCTTCGATCCTGAGCAAATGCCGGGGCAAAAGAGCCGCTTAATGGGTGGCGGCATTCATTATCCCT
ATGTGGAAGGTCTAACCATTGCCGAGGCGATGAATGAGCTGACGCTGATGTCGGTCGGACTCTACGGAAAAACCTTGCCG
CCGCAAAACGGCGCGCCTATCCGCTTAGTGGTACCTTGGAAATACGGTTTTAAGAGCATTAAATCCATCGTCCGCATTCG
GGTGATGGACAAGCAGCCTCCCACCAGTTGGAATCAACTCGCGCCCCATGAGTATGGCTTTTATGCCAATGTGAATCCTG
CGGTCGATCATCCCCGTTGGTCACAGGCGAGCGAGCGGCGCATTGGCGAGGGCGGTTTGTTTTCGGCAAAACGCATCGAT
ACGCAGCCCTTTAATGGTTATGGCGAATTTGTCGCCTCGTTATATGAGGGGATGGATCTGAGGCAGTTTTATTAA

Upstream 100 bases:

>100_bases
ACAGCTTATCAACACAGGTAAATATACCTGAGGCTTTTTGGGCGAGCGCAGAGTGTGAGTCAGCGCCGGTACATAACATT
TATTTTTGCAGAGGTGTCCA

Downstream 100 bases:

>100_bases
CTCACTTGGCGGCTGTTGTTTAGGCGCCATTGATTGCGCCTAGCGAACGAGCTGCAATATCTAGCGGCATACTGGTTAGT
GCCTTGAAAGAGTCAAAAGA

Product: putative sulfite oxidase subunit YedY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 343

Protein sequence:

>344_residues
MANQSRFTPGILKKARWHIQDNQVTPESVFKARRHIVKAMGLGAIGASIPGYVQAGLFDLFGEQPKTSFITTPLTFEANV
RFGKDEVLTPVDKVTTHNNFYEFGTSKQDPSDNAQQFKVDPWQLRIEGEVERPMTLDYQDLTKLFPLEERIYRLRCVEAW
SMVIPWVGFPLAALLKKVGVTSKGKYVAFETAFDPEQMPGQKSRLMGGGIHYPYVEGLTIAEAMNELTLMSVGLYGKTLP
PQNGAPIRLVVPWKYGFKSIKSIVRIRVMDKQPPTSWNQLAPHEYGFYANVNPAVDHPRWSQASERRIGEGGLFSAKRID
TQPFNGYGEFVASLYEGMDLRQFY

Sequences:

>Translated_344_residues
MANQSRFTPGILKKARWHIQDNQVTPESVFKARRHIVKAMGLGAIGASIPGYVQAGLFDLFGEQPKTSFITTPLTFEANV
RFGKDEVLTPVDKVTTHNNFYEFGTSKQDPSDNAQQFKVDPWQLRIEGEVERPMTLDYQDLTKLFPLEERIYRLRCVEAW
SMVIPWVGFPLAALLKKVGVTSKGKYVAFETAFDPEQMPGQKSRLMGGGIHYPYVEGLTIAEAMNELTLMSVGLYGKTLP
PQNGAPIRLVVPWKYGFKSIKSIVRIRVMDKQPPTSWNQLAPHEYGFYANVNPAVDHPRWSQASERRIGEGGLFSAKRID
TQPFNGYGEFVASLYEGMDLRQFY
>Mature_343_residues
ANQSRFTPGILKKARWHIQDNQVTPESVFKARRHIVKAMGLGAIGASIPGYVQAGLFDLFGEQPKTSFITTPLTFEANVR
FGKDEVLTPVDKVTTHNNFYEFGTSKQDPSDNAQQFKVDPWQLRIEGEVERPMTLDYQDLTKLFPLEERIYRLRCVEAWS
MVIPWVGFPLAALLKKVGVTSKGKYVAFETAFDPEQMPGQKSRLMGGGIHYPYVEGLTIAEAMNELTLMSVGLYGKTLPP
QNGAPIRLVVPWKYGFKSIKSIVRIRVMDKQPPTSWNQLAPHEYGFYANVNPAVDHPRWSQASERRIGEGGLFSAKRIDT
QPFNGYGEFVASLYEGMDLRQFY

Specific function: The exact function is not known. Can catalyze the reduction of a variety of substrates like dimethyl sulfoxide, trimethylamine N-oxide, phenylmethyl sulfoxide and L-methionine sulfoxide. Cannot reduce cyclic N-oxides. Shows no activity as sulfite oxidase

COG id: COG2041

COG function: function code R; Sulfite oxidase and related enzymes

Gene ontology:

Cell location: Periplasm. Note=Is attached to the inner membrane when interacting with the yedZ subunit (By similarity) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yedY family [H]

Homologues:

Organism=Escherichia coli, GI1788282, Length=328, Percent_Identity=57.9268292682927, Blast_Score=394, Evalue=1e-111,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000572
- InterPro:   IPR006311
- InterPro:   IPR022867 [H]

Pfam domain/function: PF00174 Oxidored_molyb [H]

EC number: NA

Molecular weight: Translated: 38908; Mature: 38777

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANQSRFTPGILKKARWHIQDNQVTPESVFKARRHIVKAMGLGAIGASIPGYVQAGLFDL
CCCCCCCCHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHCCCHHCCCCCHHHHHHHHHH
FGEQPKTSFITTPLTFEANVRFGKDEVLTPVDKVTTHNNFYEFGTSKQDPSDNAQQFKVD
HCCCCCCCEEECCEEEEECCEECCHHHCCCHHHHHCCCCCEECCCCCCCCCCCCCEEECC
PWQLRIEGEVERPMTLDYQDLTKLFPLEERIYRLRCVEAWSMVIPWVGFPLAALLKKVGV
CEEEEEECCCCCCEEECHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
TSKGKYVAFETAFDPEQMPGQKSRLMGGGIHYPYVEGLTIAEAMNELTLMSVGLYGKTLP
CCCCCEEEEEECCCHHHCCCHHHHHCCCCCCCCHHCCCHHHHHHHHHHEEEECCCCCCCC
PQNGAPIRLVVPWKYGFKSIKSIVRIRVMDKQPPTSWNQLAPHEYGFYANVNPAVDHPRW
CCCCCCEEEEECCHHHHHHHHHHHEEEEECCCCCCCHHHCCCCCCCEEECCCCCCCCCCC
SQASERRIGEGGLFSAKRIDTQPFNGYGEFVASLYEGMDLRQFY
CCHHHHCCCCCCCCCHHHCCCCCCCCHHHHHHHHHCCCCHHHCC
>Mature Secondary Structure 
ANQSRFTPGILKKARWHIQDNQVTPESVFKARRHIVKAMGLGAIGASIPGYVQAGLFDL
CCCCCCCHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHCCCHHCCCCCHHHHHHHHHH
FGEQPKTSFITTPLTFEANVRFGKDEVLTPVDKVTTHNNFYEFGTSKQDPSDNAQQFKVD
HCCCCCCCEEECCEEEEECCEECCHHHCCCHHHHHCCCCCEECCCCCCCCCCCCCEEECC
PWQLRIEGEVERPMTLDYQDLTKLFPLEERIYRLRCVEAWSMVIPWVGFPLAALLKKVGV
CEEEEEECCCCCCEEECHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
TSKGKYVAFETAFDPEQMPGQKSRLMGGGIHYPYVEGLTIAEAMNELTLMSVGLYGKTLP
CCCCCEEEEEECCCHHHCCCHHHHHCCCCCCCCHHCCCHHHHHHHHHHEEEECCCCCCCC
PQNGAPIRLVVPWKYGFKSIKSIVRIRVMDKQPPTSWNQLAPHEYGFYANVNPAVDHPRW
CCCCCCEEEEECCHHHHHHHHHHHEEEEECCCCCCCHHHCCCCCCCEEECCCCCCCCCCC
SQASERRIGEGGLFSAKRIDTQPFNGYGEFVASLYEGMDLRQFY
CCHHHHCCCCCCCCCHHHCCCCCCCCHHHHHHHHHCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Mo [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]