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The map label for this gene is rnfD [H]

Identifier: 117920615

GI number: 117920615

Start: 2604281

End: 2605330

Strand: Direct

Name: rnfD [H]

Synonym: Shewana3_2171

Alternate gene names: 117920615

Gene position: 2604281-2605330 (Clockwise)

Preceding gene: 117920614

Following gene: 117920616

Centisome position: 52.38

GC content: 51.71

Gene sequence:

>1050_bases
ATGGCGTTTAAAATAGCCTCATCACCCCATGTTACCCGTAATTTGCATACTTCAACGGTTATGCAAAGGGTTATTTTATG
CTTGTTACCCGGCCTTGTGGTGCAATGCGCCTTTTTCGGCTGGGGTACGCTTATTCAAGTGTTACTGGCAATTATCGTAG
CCTTAAGCTGTGAAGCCGCGGTGATGAAACTGCGTAACCGCAGCATCAAAGCGAGTTTAAGCGATAACAGCGCCATGCTG
ACGGCAATCTTAATCGGGGTTGCGATCCCGCCGCTGGCACCTTGGTGGATGATCGTTATGGGCACAGTGTTTGCGATTGT
TATCGTCAAACACCTCTACGGCGGCCTAGGCCATAACCTGTTCAACCCCGCAATGGCCGCCTATGTGTTACTGCTGGTTT
CATTCCCTGTACAGATGACCAGTTGGATAGCACCAAGTACCGTTGCGCTCAATACCCCAAGTGTGATCGATAGTTTGCAA
TTGATCTTCAATGTCGGCGCCCATGGTGGCATGGAACAATTCCGCCTCGGTATCGATGGGATCAGTATGGCGACACCACT
CGATACCCTCAAAACCGATCTGTCCTTAGGGCTCACCACCACTGAAAGTATGGCTAAAAGCATCTTCGATGGCGGCACTG
GCGTTGGTTGGTTTTGGGTCAATTTGGCTTATCTTGCTGGCGGTTTAGTGCTACTCAAATTAAAAGCCATCCGTTGGCAT
ATCAGCACCGGCGTATTGGCGGGATTATTTGTGGCATCGAGCATTGGCTTTTTACTGTCGCCCGATACTCAGGCAAGCCC
ACTGTTCCATTTATTCTCGGGCGCGACCATGCTCGCCGCCTTCTTTATTGCGACCGATCCTGTCACCGCGGCGACCAGTC
CGCGCGGCCGTTTGATTTTCGGCGCATTAATTGGCGTCTTGGTCTATATCATTCGTACCCAAGGTGGCTACCCCGATGCC
TTCGCCTTTGCCGTACTGCTCGCAAACCTGTGCGCGCCATTTATTGACTACTATGTGCGTCCGCGCACCTATGGCCATTC
AGCGCCCTAG

Upstream 100 bases:

>100_bases
TCAGCGACGCAAATGAATAGCACTGCGGGTTTTAACCTCAGTGCTTTGAAAATGATTAGCTTAAAAATCAGTGACTCAAG
ATTAGATAAAAGGGATCACA

Downstream 100 bases:

>100_bases
GCCTGTGGCAAAAGAATCAAGCATGCTTGAACAAAGATTCTTGAGGAATAAAAGTGAATAATCCAATGATTAAAAATGGT
CTGTTACTTGCGCTATTTGC

Product: electron transport complex protein RnfD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 349; Mature: 348

Protein sequence:

>349_residues
MAFKIASSPHVTRNLHTSTVMQRVILCLLPGLVVQCAFFGWGTLIQVLLAIIVALSCEAAVMKLRNRSIKASLSDNSAML
TAILIGVAIPPLAPWWMIVMGTVFAIVIVKHLYGGLGHNLFNPAMAAYVLLLVSFPVQMTSWIAPSTVALNTPSVIDSLQ
LIFNVGAHGGMEQFRLGIDGISMATPLDTLKTDLSLGLTTTESMAKSIFDGGTGVGWFWVNLAYLAGGLVLLKLKAIRWH
ISTGVLAGLFVASSIGFLLSPDTQASPLFHLFSGATMLAAFFIATDPVTAATSPRGRLIFGALIGVLVYIIRTQGGYPDA
FAFAVLLANLCAPFIDYYVRPRTYGHSAP

Sequences:

>Translated_349_residues
MAFKIASSPHVTRNLHTSTVMQRVILCLLPGLVVQCAFFGWGTLIQVLLAIIVALSCEAAVMKLRNRSIKASLSDNSAML
TAILIGVAIPPLAPWWMIVMGTVFAIVIVKHLYGGLGHNLFNPAMAAYVLLLVSFPVQMTSWIAPSTVALNTPSVIDSLQ
LIFNVGAHGGMEQFRLGIDGISMATPLDTLKTDLSLGLTTTESMAKSIFDGGTGVGWFWVNLAYLAGGLVLLKLKAIRWH
ISTGVLAGLFVASSIGFLLSPDTQASPLFHLFSGATMLAAFFIATDPVTAATSPRGRLIFGALIGVLVYIIRTQGGYPDA
FAFAVLLANLCAPFIDYYVRPRTYGHSAP
>Mature_348_residues
AFKIASSPHVTRNLHTSTVMQRVILCLLPGLVVQCAFFGWGTLIQVLLAIIVALSCEAAVMKLRNRSIKASLSDNSAMLT
AILIGVAIPPLAPWWMIVMGTVFAIVIVKHLYGGLGHNLFNPAMAAYVLLLVSFPVQMTSWIAPSTVALNTPSVIDSLQL
IFNVGAHGGMEQFRLGIDGISMATPLDTLKTDLSLGLTTTESMAKSIFDGGTGVGWFWVNLAYLAGGLVLLKLKAIRWHI
STGVLAGLFVASSIGFLLSPDTQASPLFHLFSGATMLAAFFIATDPVTAATSPRGRLIFGALIGVLVYIIRTQGGYPDAF
AFAVLLANLCAPFIDYYVRPRTYGHSAP

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family [H]

Homologues:

Organism=Escherichia coli, GI1787917, Length=349, Percent_Identity=58.7392550143267, Blast_Score=411, Evalue=1e-116,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011303
- InterPro:   IPR004338 [H]

Pfam domain/function: PF03116 NQR2_RnfD_RnfE [H]

EC number: NA

Molecular weight: Translated: 37257; Mature: 37125

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFKIASSPHVTRNLHTSTVMQRVILCLLPGLVVQCAFFGWGTLIQVLLAIIVALSCEAA
CCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VMKLRNRSIKASLSDNSAMLTAILIGVAIPPLAPWWMIVMGTVFAIVIVKHLYGGLGHNL
HHHHHCCCEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHH
FNPAMAAYVLLLVSFPVQMTSWIAPSTVALNTPSVIDSLQLIFNVGAHGGMEQFRLGIDG
HHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHCCCCCHHHHHHCCCC
ISMATPLDTLKTDLSLGLTTTESMAKSIFDGGTGVGWFWVNLAYLAGGLVLLKLKAIRWH
CCHHCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ISTGVLAGLFVASSIGFLLSPDTQASPLFHLFSGATMLAAFFIATDPVTAATSPRGRLIF
HHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
GALIGVLVYIIRTQGGYPDAFAFAVLLANLCAPFIDYYVRPRTYGHSAP
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
AFKIASSPHVTRNLHTSTVMQRVILCLLPGLVVQCAFFGWGTLIQVLLAIIVALSCEAA
CEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VMKLRNRSIKASLSDNSAMLTAILIGVAIPPLAPWWMIVMGTVFAIVIVKHLYGGLGHNL
HHHHHCCCEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHH
FNPAMAAYVLLLVSFPVQMTSWIAPSTVALNTPSVIDSLQLIFNVGAHGGMEQFRLGIDG
HHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHCCCCCHHHHHHCCCC
ISMATPLDTLKTDLSLGLTTTESMAKSIFDGGTGVGWFWVNLAYLAGGLVLLKLKAIRWH
CCHHCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ISTGVLAGLFVASSIGFLLSPDTQASPLFHLFSGATMLAAFFIATDPVTAATSPRGRLIF
HHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
GALIGVLVYIIRTQGGYPDAFAFAVLLANLCAPFIDYYVRPRTYGHSAP
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA