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The map label for this gene is rnfA [H]

Identifier: 117920612

GI number: 117920612

Start: 2600670

End: 2601248

Strand: Direct

Name: rnfA [H]

Synonym: Shewana3_2168

Alternate gene names: 117920612

Gene position: 2600670-2601248 (Clockwise)

Preceding gene: 117920611

Following gene: 117920613

Centisome position: 52.3

GC content: 46.8

Gene sequence:

>579_bases
ATGAGTGAATATCTCCTGTTGTTGATCAGCACCGTACTGGTCAACAATTTCGTATTAGTGAAATTCTTAGGTTTATGTCC
TTTTATGGGGGTCTCCAGTAAATTGGAGTCCGCTATTGGCATGTCCATGGCGACCACCTTCGTGTTGACCTTGGCATCCA
TTCTCAGTTACCTCGTCAACCAATATCTATTATTGCCTTTTGACCTCAGCTACTTGCGTACCATGAGCTTTATTCTGGTC
ATTGCTGTGGTGGTGCAATTTACTGAGATGGTGGTGCAAAAAACCAGTGCCTCCCTACACCGAGCACTCGGGATCTATCT
GCCATTGATCACCACTAACTGTGCCGTACTGGGTGTGGCCCTGTTAAACGTGAACGAGAAACACGATTTTATTCAGTCAG
CTATCTATGGTTTTGGGGCTGCGGTAGGTTTTTCCTTAGTGTTAATTCTGTTTTCCGCGATGCGCGAACGTTTAGCGGCC
GCCGATGTGCCAATGCCGTTTAAGGGCGGCGCCATCGCCATGATCACCGCAGGCTTAATGTCTTTAGCCTTTATGGGATT
CACAGGATTGGTTAAATAG

Upstream 100 bases:

>100_bases
CAAATTTACAGTAAAGATAGTTAACCCTGCATTCTATATGTTGTTTATGCAAACGGAAAAGTCGATAATACGGCCAAGAT
CCGTTTAGACAAGTATTGAG

Downstream 100 bases:

>100_bases
ATGTCCACCATGTTAATTGCCGTTATCTTACTGACCCTATTGGCATTGTTCTTTGGGGTATTACTCGGATTTGCTGCCTT
AAAATTTAAGGTTGAAGGCA

Product: Na(+)-translocating NADH-quinone reductase subunit E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MSEYLLLLISTVLVNNFVLVKFLGLCPFMGVSSKLESAIGMSMATTFVLTLASILSYLVNQYLLLPFDLSYLRTMSFILV
IAVVVQFTEMVVQKTSASLHRALGIYLPLITTNCAVLGVALLNVNEKHDFIQSAIYGFGAAVGFSLVLILFSAMRERLAA
ADVPMPFKGGAIAMITAGLMSLAFMGFTGLVK

Sequences:

>Translated_192_residues
MSEYLLLLISTVLVNNFVLVKFLGLCPFMGVSSKLESAIGMSMATTFVLTLASILSYLVNQYLLLPFDLSYLRTMSFILV
IAVVVQFTEMVVQKTSASLHRALGIYLPLITTNCAVLGVALLNVNEKHDFIQSAIYGFGAAVGFSLVLILFSAMRERLAA
ADVPMPFKGGAIAMITAGLMSLAFMGFTGLVK
>Mature_191_residues
SEYLLLLISTVLVNNFVLVKFLGLCPFMGVSSKLESAIGMSMATTFVLTLASILSYLVNQYLLLPFDLSYLRTMSFILVI
AVVVQFTEMVVQKTSASLHRALGIYLPLITTNCAVLGVALLNVNEKHDFIQSAIYGFGAAVGFSLVLILFSAMRERLAAA
DVPMPFKGGAIAMITAGLMSLAFMGFTGLVK

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4657

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787914, Length=192, Percent_Identity=75, Blast_Score=299, Evalue=7e-83,
Organism=Escherichia coli, GI1787919, Length=160, Percent_Identity=32.5, Blast_Score=68, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR011293 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 20721; Mature: 20590

Theoretical pI: Translated: 8.68; Mature: 8.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEYLLLLISTVLVNNFVLVKFLGLCPFMGVSSKLESAIGMSMATTFVLTLASILSYLVN
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QYLLLPFDLSYLRTMSFILVIAVVVQFTEMVVQKTSASLHRALGIYLPLITTNCAVLGVA
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLNVNEKHDFIQSAIYGFGAAVGFSLVLILFSAMRERLAAADVPMPFKGGAIAMITAGLM
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
SLAFMGFTGLVK
HHHHHHHHHCCC
>Mature Secondary Structure 
SEYLLLLISTVLVNNFVLVKFLGLCPFMGVSSKLESAIGMSMATTFVLTLASILSYLVN
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QYLLLPFDLSYLRTMSFILVIAVVVQFTEMVVQKTSASLHRALGIYLPLITTNCAVLGVA
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLNVNEKHDFIQSAIYGFGAAVGFSLVLILFSAMRERLAAADVPMPFKGGAIAMITAGLM
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
SLAFMGFTGLVK
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA