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The map label for this gene is rpfG [H]

Identifier: 117920549

GI number: 117920549

Start: 2529187

End: 2530764

Strand: Direct

Name: rpfG [H]

Synonym: Shewana3_2105

Alternate gene names: 117920549

Gene position: 2529187-2530764 (Clockwise)

Preceding gene: 117920547

Following gene: 117920551

Centisome position: 50.87

GC content: 47.66

Gene sequence:

>1578_bases
ATGGTGATTGATCTTGCAAACAAAAAGCCGTTGTTCTCCGCGAAGAAAGCCACAGAAATATCCCCCGCTGCCGCTCCGTG
GAAGATCCTTGTTGTTGATGATGAACCCGATGTCCACACAGTCACCAAACTTGCTCTTTCACGTTTTCGACTCGATGGCC
GTGCCCTCACCTTTATTAATGCCTACAGTGGTGAACAGGCCAAAGAACTGCTCGCACAGGAGCAAGACATTGCCGTCGCC
TTTATCGATGTGGTGATGGAGAGCGACCATGCTGGGCTCGAGCTGGTCAAATGGATCCGCGAAGTGCAAGTGAACAAAAA
TATTCGACTCATTCTGCGCACCGGCCAGCCAGGACAAGCCCCCGAAGAAGATGTGATAGTCAATTACGATATTAATGATT
ACAAAGCAAAATCTGAGCTTGATTCCCGTAAGCTGATGACCAGCGTCTACTCTTCATTACGCTCGTACCGCGATATTATG
GAAATCGAACAAGCAAGACGCGCGCAAATGAATCACAGAATAGGTTTAGAGCGGGTACTTGAGGCCACCTCGGGCTTGTT
TGAACTGCGAACGCTACATAAGTTTGCCGATGGACTCCTTACACAAGTCGCCACCCTACTCAACCTCGATACTGAAACCT
TATTACTCACCTGCAATGCGATGGATGCGATCAGCGGCCATGTGGATTCGGCCGAAATCGAAATCCTCGCGGGAACAGGC
CAGTTTGCCAATAGCCCTCCTCATAAAGAACTCCCTGAGCATATTGGTAAATTACTACGTAGCGCCTTAATCCAAAAACG
CTGCCTATACGAAGACAATTGTTTTGTGGGTTACTTCCCGACAAAGAGCGGGCTTATCAATCTACTCTATATGGATGGCA
TTGATAAAATAGATGATTTGGACAAAAAACTGGTCGATATCTTTGCGATAAACGTCGGGGTTGCGTTTGAGAATCTACTC
CTGAATCAGGAAGTTGAAGATACCCAATCAGAACTGATCCTGCGCTTAGGCGATGTGGTTGAGAGTCGTTCTAAAGAGGC
CGCCAATCATGTTAAACGCATGGCGGAATATTGTGCCCAGCTAGCGTTATTGGCTGGGTTAACCGAAATCGAAGCCGACT
TGCTGCGCCGCGCTTCACCTATGCACGATATAGGTAAAATCGCGATCCCCGATGCGGTGTTACTCAAACCCGGTAAATTA
GATGATCAAGAATGGTCAGTGATGCGCCAACATCCGACTATTGGCTATCAAATTCTCGCAAATTCCGAGCGGCCGATCCT
TAAAGCGGCGGCGATTATCGCCCTACAACACCATGAAAAATATGACGGCTCTGGCTATCCAGGCAATTTACAACAAGATC
AAATTCACATTTTCGCCCGCATCGTTGCTATCGCCGATGTGTTCGATGCCCTGTCTCACGCCCGTTGCTATAAAGCCGCA
TGGCCATTAAACGAAGTGATAGATGAAATGCGCAAAGGTGCGGGTAAGCATTTTGACCCCGATTTGCTGGAACTCTTTAT
CAATAACATCGATATTTTCGTGCGGGTCAAAGAGAGTTGGAAGGATCATGACGAATAA

Upstream 100 bases:

>100_bases
ATAATGCTAACTCCCCCACTTTATTAATTTTTTCAACTTATCCGATTGGCTTCTACTACACTCTAACTGTGTGATGCTCC
TTTATGTGATGAGGTATCGG

Downstream 100 bases:

>100_bases
TGAAAATAAGCTTAAAAATCAGTAGAAAATTCATCATTATTCGCCATATCAACGCGTTTATTCGTTTAAATTGACCAACA
GGGGTTTAATAGGAGTTAAT

Product: response regulator receiver modulated metal dependent phosphohydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 525; Mature: 525

Protein sequence:

>525_residues
MVIDLANKKPLFSAKKATEISPAAAPWKILVVDDEPDVHTVTKLALSRFRLDGRALTFINAYSGEQAKELLAQEQDIAVA
FIDVVMESDHAGLELVKWIREVQVNKNIRLILRTGQPGQAPEEDVIVNYDINDYKAKSELDSRKLMTSVYSSLRSYRDIM
EIEQARRAQMNHRIGLERVLEATSGLFELRTLHKFADGLLTQVATLLNLDTETLLLTCNAMDAISGHVDSAEIEILAGTG
QFANSPPHKELPEHIGKLLRSALIQKRCLYEDNCFVGYFPTKSGLINLLYMDGIDKIDDLDKKLVDIFAINVGVAFENLL
LNQEVEDTQSELILRLGDVVESRSKEAANHVKRMAEYCAQLALLAGLTEIEADLLRRASPMHDIGKIAIPDAVLLKPGKL
DDQEWSVMRQHPTIGYQILANSERPILKAAAIIALQHHEKYDGSGYPGNLQQDQIHIFARIVAIADVFDALSHARCYKAA
WPLNEVIDEMRKGAGKHFDPDLLELFINNIDIFVRVKESWKDHDE

Sequences:

>Translated_525_residues
MVIDLANKKPLFSAKKATEISPAAAPWKILVVDDEPDVHTVTKLALSRFRLDGRALTFINAYSGEQAKELLAQEQDIAVA
FIDVVMESDHAGLELVKWIREVQVNKNIRLILRTGQPGQAPEEDVIVNYDINDYKAKSELDSRKLMTSVYSSLRSYRDIM
EIEQARRAQMNHRIGLERVLEATSGLFELRTLHKFADGLLTQVATLLNLDTETLLLTCNAMDAISGHVDSAEIEILAGTG
QFANSPPHKELPEHIGKLLRSALIQKRCLYEDNCFVGYFPTKSGLINLLYMDGIDKIDDLDKKLVDIFAINVGVAFENLL
LNQEVEDTQSELILRLGDVVESRSKEAANHVKRMAEYCAQLALLAGLTEIEADLLRRASPMHDIGKIAIPDAVLLKPGKL
DDQEWSVMRQHPTIGYQILANSERPILKAAAIIALQHHEKYDGSGYPGNLQQDQIHIFARIVAIADVFDALSHARCYKAA
WPLNEVIDEMRKGAGKHFDPDLLELFINNIDIFVRVKESWKDHDE
>Mature_525_residues
MVIDLANKKPLFSAKKATEISPAAAPWKILVVDDEPDVHTVTKLALSRFRLDGRALTFINAYSGEQAKELLAQEQDIAVA
FIDVVMESDHAGLELVKWIREVQVNKNIRLILRTGQPGQAPEEDVIVNYDINDYKAKSELDSRKLMTSVYSSLRSYRDIM
EIEQARRAQMNHRIGLERVLEATSGLFELRTLHKFADGLLTQVATLLNLDTETLLLTCNAMDAISGHVDSAEIEILAGTG
QFANSPPHKELPEHIGKLLRSALIQKRCLYEDNCFVGYFPTKSGLINLLYMDGIDKIDDLDKKLVDIFAINVGVAFENLL
LNQEVEDTQSELILRLGDVVESRSKEAANHVKRMAEYCAQLALLAGLTEIEADLLRRASPMHDIGKIAIPDAVLLKPGKL
DDQEWSVMRQHPTIGYQILANSERPILKAAAIIALQHHEKYDGSGYPGNLQQDQIHIFARIVAIADVFDALSHARCYKAA
WPLNEVIDEMRKGAGKHFDPDLLELFINNIDIFVRVKESWKDHDE

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: COG3437

COG function: function code KT; Response regulator containing a CheY-like receiver domain and an HD-GYP domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 58917; Mature: 58917

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVIDLANKKPLFSAKKATEISPAAAPWKILVVDDEPDVHTVTKLALSRFRLDGRALTFIN
CEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEE
AYSGEQAKELLAQEQDIAVAFIDVVMESDHAGLELVKWIREVQVNKNIRLILRTGQPGQA
CCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCC
PEEDVIVNYDINDYKAKSELDSRKLMTSVYSSLRSYRDIMEIEQARRAQMNHRIGLERVL
CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EATSGLFELRTLHKFADGLLTQVATLLNLDTETLLLTCNAMDAISGHVDSAEIEILAGTG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHCCCCCCCEEEEEECCC
QFANSPPHKELPEHIGKLLRSALIQKRCLYEDNCFVGYFPTKSGLINLLYMDGIDKIDDL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEECCCCHHHHH
DKKLVDIFAINVGVAFENLLLNQEVEDTQSELILRLGDVVESRSKEAANHVKRMAEYCAQ
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LALLAGLTEIEADLLRRASPMHDIGKIAIPDAVLLKPGKLDDQEWSVMRQHPTIGYQILA
HHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCEEECCCCCCCHHHHHHHCCCCCCEEEEE
NSERPILKAAAIIALQHHEKYDGSGYPGNLQQDQIHIFARIVAIADVFDALSHARCYKAA
CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
WPLNEVIDEMRKGAGKHFDPDLLELFINNIDIFVRVKESWKDHDE
CCHHHHHHHHHHCCCCCCCHHHHHHHHCCCEEEEEEEHHCCCCCC
>Mature Secondary Structure
MVIDLANKKPLFSAKKATEISPAAAPWKILVVDDEPDVHTVTKLALSRFRLDGRALTFIN
CEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEE
AYSGEQAKELLAQEQDIAVAFIDVVMESDHAGLELVKWIREVQVNKNIRLILRTGQPGQA
CCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCC
PEEDVIVNYDINDYKAKSELDSRKLMTSVYSSLRSYRDIMEIEQARRAQMNHRIGLERVL
CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EATSGLFELRTLHKFADGLLTQVATLLNLDTETLLLTCNAMDAISGHVDSAEIEILAGTG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHCCCCCCCEEEEEECCC
QFANSPPHKELPEHIGKLLRSALIQKRCLYEDNCFVGYFPTKSGLINLLYMDGIDKIDDL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEECCCCHHHHH
DKKLVDIFAINVGVAFENLLLNQEVEDTQSELILRLGDVVESRSKEAANHVKRMAEYCAQ
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LALLAGLTEIEADLLRRASPMHDIGKIAIPDAVLLKPGKLDDQEWSVMRQHPTIGYQILA
HHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCEEECCCCCCCHHHHHHHCCCCCCEEEEE
NSERPILKAAAIIALQHHEKYDGSGYPGNLQQDQIHIFARIVAIADVFDALSHARCYKAA
CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
WPLNEVIDEMRKGAGKHFDPDLLELFINNIDIFVRVKESWKDHDE
CCHHHHHHHHHHCCCCCCCHHHHHHHHCCCEEEEEEEHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]