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The map label for this gene is xynD [H]

Identifier: 117920513

GI number: 117920513

Start: 2476356

End: 2477303

Strand: Reverse

Name: xynD [H]

Synonym: Shewana3_2069

Alternate gene names: 117920513

Gene position: 2477303-2476356 (Counterclockwise)

Preceding gene: 117920524

Following gene: 117920507

Centisome position: 49.82

GC content: 46.62

Gene sequence:

>948_bases
ATGAAAAAGGCATTTTTGAGTGTGTGTTTGGCATTGAGTACGAGTGTCAGCACTGCAGCGATTGCTGCTAACCCTCTGTT
TACGGATGTATTTACCGCCGATCCTGCCGCCATAGTGCACCAAGATACCGTCTATCTTTATACTGGCCATGACGTTGCAA
AGGACAATCGCACCTTCTTCGAAATGCATGATTGGCTCGTTTTTAGCTCTAAGGATATGCACAATTGGACGGCCCATGGC
AGCAAGTTATCGGTGAAGGATTTCAGCTGGGCTAAAGGAGATGCATGGGCTAGCCATGTGATCGAAAAAGAAGGTCAGTT
CTACTGGTATGTGACGGCAAGACACAACAAAATCAATGGCTTTGCCATAGGTGTCGCTGTTGCTGATAGTCCACTTGGCC
CCTTCAAGGATGCCCGCGGCACTGCCCTTATCACCAATGACATGACCACAGATACTGAGATTGATTGGGATGATATCGAT
CCTGCGGTCTTTATCGATGATGACAAGCAAGCTTATATTTTCTGGGGTAACACTAAGCCAAGATTTGCCAAGTTAAAACC
CAATATGATTGAACTCGATGGCCAAATTCATGCCATTGATGTGCCTAACTTTACCGAAGCGCTCTGGGTACATAAAAAAG
ATAAAACCTATTATCTTTCATACGCTTCAGGCTTCCCTGAAAAAATTGCCTATGCCACCAGTGATAGCATTCTTGGCCCG
TGGAAGTACCAAGGCATCTTAAATGAAGTGGCGGGTAACTCGCCGACAAACCATCAAGCGATTATTGAATTTAAAGGTAA
ATCCTACTTTATCTATCATACCGGCGCATCGCAGGATGGCGGCGGTGAGTTTAGACGTTCAGTTGCCATTGACCCGCTGC
ATTACAATGCCGACGGCACCCTACAGCGCGTTCATATGACCAGCGAAGGCATCAGCGAGCCGCAGTAA

Upstream 100 bases:

>100_bases
GCTGATGCCCTGAGTTAACAATTTGTACTTTAATATTGCTAGCACGTAAAAGTATTGGTATTACTATAATACCAAAATAT
CAAAAAACAATAGAGGAAGT

Downstream 100 bases:

>100_bases
CCCTATTTTCTGCTCGCAGTAAAACAAAAAAGGTGAACCTAAGTTCACCTTTTTTATTGATCGAGGGACGTTAAAGATAA
GTAACTCGTTACTTATGCTA

Product: glycoside hydrolase family protein

Products: NA

Alternate protein names: AXH; AXH-m2,3; AXH-m23; Alpha-L-arabinofuranosidase; AF [H]

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MKKAFLSVCLALSTSVSTAAIAANPLFTDVFTADPAAIVHQDTVYLYTGHDVAKDNRTFFEMHDWLVFSSKDMHNWTAHG
SKLSVKDFSWAKGDAWASHVIEKEGQFYWYVTARHNKINGFAIGVAVADSPLGPFKDARGTALITNDMTTDTEIDWDDID
PAVFIDDDKQAYIFWGNTKPRFAKLKPNMIELDGQIHAIDVPNFTEALWVHKKDKTYYLSYASGFPEKIAYATSDSILGP
WKYQGILNEVAGNSPTNHQAIIEFKGKSYFIYHTGASQDGGGEFRRSVAIDPLHYNADGTLQRVHMTSEGISEPQ

Sequences:

>Translated_315_residues
MKKAFLSVCLALSTSVSTAAIAANPLFTDVFTADPAAIVHQDTVYLYTGHDVAKDNRTFFEMHDWLVFSSKDMHNWTAHG
SKLSVKDFSWAKGDAWASHVIEKEGQFYWYVTARHNKINGFAIGVAVADSPLGPFKDARGTALITNDMTTDTEIDWDDID
PAVFIDDDKQAYIFWGNTKPRFAKLKPNMIELDGQIHAIDVPNFTEALWVHKKDKTYYLSYASGFPEKIAYATSDSILGP
WKYQGILNEVAGNSPTNHQAIIEFKGKSYFIYHTGASQDGGGEFRRSVAIDPLHYNADGTLQRVHMTSEGISEPQ
>Mature_315_residues
MKKAFLSVCLALSTSVSTAAIAANPLFTDVFTADPAAIVHQDTVYLYTGHDVAKDNRTFFEMHDWLVFSSKDMHNWTAHG
SKLSVKDFSWAKGDAWASHVIEKEGQFYWYVTARHNKINGFAIGVAVADSPLGPFKDARGTALITNDMTTDTEIDWDDID
PAVFIDDDKQAYIFWGNTKPRFAKLKPNMIELDGQIHAIDVPNFTEALWVHKKDKTYYLSYASGFPEKIAYATSDSILGP
WKYQGILNEVAGNSPTNHQAIIEFKGKSYFIYHTGASQDGGGEFRRSVAIDPLHYNADGTLQRVHMTSEGISEPQ

Specific function: Cleaves arabinose units from O-2- or O-3-monosubstituted xylose residues, thereby assisting in arabinoxylan (AX) and short- chain arabinoxylo-oligosaccharide (AXOS) degradation. Is more active on wheat bran AXOS than on wheat water-extractable AX and rye

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CBM6 (carbohydrate binding type-6) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005084
- InterPro:   IPR006584
- InterPro:   IPR008979
- InterPro:   IPR006710 [H]

Pfam domain/function: PF03422 CBM_6; PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.55 [H]

Molecular weight: Translated: 35160; Mature: 35160

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKAFLSVCLALSTSVSTAAIAANPLFTDVFTADPAAIVHQDTVYLYTGHDVAKDNRTFF
CCHHHHHHHHHHHCCCCEEEEECCCCEEEEECCCCCEEEEECEEEEEECCEECCCCCEEE
EMHDWLVFSSKDMHNWTAHGSKLSVKDFSWAKGDAWASHVIEKEGQFYWYVTARHNKING
EEEEEEEECCCCCCCEECCCCEEEECCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCE
FAIGVAVADSPLGPFKDARGTALITNDMTTDTEIDWDDIDPAVFIDDDKQAYIFWGNTKP
EEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCEEEEEECCCCC
RFAKLKPNMIELDGQIHAIDVPNFTEALWVHKKDKTYYLSYASGFPEKIAYATSDSILGP
CEEECCCCEEEECCEEEEEECCCCCCEEEEEECCCEEEEEECCCCCHHEEEECCCCCCCC
WKYQGILNEVAGNSPTNHQAIIEFKGKSYFIYHTGASQDGGGEFRRSVAIDPLHYNADGT
HHHHHHHHHHCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCHHHHEEEECCEEECCCCC
LQRVHMTSEGISEPQ
EEEEEECCCCCCCCC
>Mature Secondary Structure
MKKAFLSVCLALSTSVSTAAIAANPLFTDVFTADPAAIVHQDTVYLYTGHDVAKDNRTFF
CCHHHHHHHHHHHCCCCEEEEECCCCEEEEECCCCCEEEEECEEEEEECCEECCCCCEEE
EMHDWLVFSSKDMHNWTAHGSKLSVKDFSWAKGDAWASHVIEKEGQFYWYVTARHNKING
EEEEEEEECCCCCCCEECCCCEEEECCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCE
FAIGVAVADSPLGPFKDARGTALITNDMTTDTEIDWDDIDPAVFIDDDKQAYIFWGNTKP
EEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCEEEEEECCCCC
RFAKLKPNMIELDGQIHAIDVPNFTEALWVHKKDKTYYLSYASGFPEKIAYATSDSILGP
CEEECCCCEEEECCEEEEEECCCCCCEEEEEECCCEEEEEECCCCCHHEEEECCCCCCCC
WKYQGILNEVAGNSPTNHQAIIEFKGKSYFIYHTGASQDGGGEFRRSVAIDPLHYNADGT
HHHHHHHHHHCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCHHHHEEEECCEEECCCCC
LQRVHMTSEGISEPQ
EEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 10658653 [H]