Click here to switch to the map view.

The map label for this gene is araB [H]

Identifier: 117920508

GI number: 117920508

Start: 2470698

End: 2472371

Strand: Direct

Name: araB [H]

Synonym: Shewana3_2064

Alternate gene names: 117920508

Gene position: 2470698-2472371 (Clockwise)

Preceding gene: 117920506

Following gene: 117920509

Centisome position: 49.69

GC content: 51.08

Gene sequence:

>1674_bases
ATGTCGAATGTTTTAGGGGCTTACGCGTTAGGGCTTGATTACGGCTCTGATTCAGTTCGCGCGTTATTGGTGGATACCCA
AACGGGCGCAGAAGTAGCAACGAATGTGGTGTACTACCCACGTTGGAAGAAGGGGCTTTTTTGCGAACCCGCGAAGAATC
AATTTAGACAACATCCCCTCGATTACATCGAAAGCCTTATCGAGGTAGTGCAAGGGCTATGGGCAAAAGCCCCGAGTGGT
GCCGCGCAAAGAGTCTGCGGTTTGAGTGTTGATACCACAGGCTCAACCCCGATTGCGGTCGATGAATCTGGTGTTGCTTT
AGCCTTAAAACCAGAGTTTGAGAATAACCCCAATGCCATGTTTTTGCTTTGGAAAGATCACAGCGCCATCATCGAAGCCA
AGCAAATTACCGCTGCGGCAAACGATTCAAGCGAAAATTACCTGAAATATGAAGGGGGAATTTACTCCTCAGAATGGTTT
TGGGCCAAAGCGCTATTTGTACTACGCCATGACGCAGAAGTCAGACAAGCGGCCTATAGCTGGGTCGAGCACTGTGATTG
GATCACCGCATTAATGACGGGCACTTCACATCCAAAGGTCTTTAAAGCAGGGCGTTGCGCCGCTGGTCACAAAGTGATGT
GGCACGAGTCATGGAATGGTTATCCGCCGAATGACTTTTTCGTTGGCATCGACCCCTTACTCGATGGCTTGAGAGACAAG
TTACCGCTAGAAACCTGCACATCTGACAAGGTTTGCGGCCAGCTAACCCCTGAGTGGGCACAGCATTTAGGGCTATCGAC
CGAGGTTATCGTGTCTTTTGGCTCATTCGACTGCCACGCAGGTGCGGTGGGGGCCAATGTTAAGCCCGGCGTCTTAACCA
AGGTAATGGGAACCTCTACCTGCGATATCACGGTCGCCAGTTATGAAGATATAGGTGAGCGTTGTATCAAAGGCATTTGT
GGTCAAGTCGATGGCTCAGTATTGCCCGGCATGATAGGGCTAGAAGCGGGTCAGTCTGCCTTTGGCGATCTCTACGCTTG
GTTTAGGGATCTCACAGCATGGCCGATGCAACAGCTTGACACTTCAGTCTTATTTGATGAAAACATCAAAGCCAAACTCA
TTCAGCAACTCGAATCTGAAACTCTGACAATGTTAGGCAATGCGGCCGCGAAAATCCCCGTTGGCGAGACGGGCATTGTC
GCACTGGATTGGATTAACGGACGTCGCACCCCCGATGCCGACCAATCTGTTGCCATGGCGATCACAGGCTTAACCATGGG
TAGCCAAGCTCCGCAAGTCTTCAAAGCCCTAGTGGAAGCCAGCGCCTATGGCGCACGGGCCATTATCGAGCGCTTCAAAC
AGGAAGGCGTTTGCATTGACCATGTGGTCACCATCGGTGGGATCTCAAAAAAATCCGACTTCATTATGCAAACCTGCGCC
GATGTGTGGAATTGCAACATCGACGTACTCGAGAGCGAGCAAAGCTGCGCATTGGGCGCCGCCATTTATGCCGCAACCGC
AGCCGGGGTTTATCCCGATGTGCTAAGTGCCCAGGCAGCCATGGCCTCGAACGTTGCGAAAACCTATCAACCAAATCCAG
AAAACGCTGAGAAATATCAAGCGCTTTACCAAGGGTACTTAGCCCTTGGCCACTATGTTGATGGAGCGAAATAA

Upstream 100 bases:

>100_bases
TTGTATTACTATTAAGCTGTAGTAATATTGTAGTACTAAATAATATTCACTCTACCTGCGTAAACCGGATCGGACGCAGA
CAAAATGTACGGGGATGCAA

Downstream 100 bases:

>100_bases
GATGTCTTTTTTAGAGCTAAAACGCGAAGTATACGAAGCCAACATGGAGCTTGAGAAGCGCAAACTGGTGACTTACACCT
TTGGCAACGTTTCACAAATT

Product: ribulokinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 557; Mature: 556

Protein sequence:

>557_residues
MSNVLGAYALGLDYGSDSVRALLVDTQTGAEVATNVVYYPRWKKGLFCEPAKNQFRQHPLDYIESLIEVVQGLWAKAPSG
AAQRVCGLSVDTTGSTPIAVDESGVALALKPEFENNPNAMFLLWKDHSAIIEAKQITAAANDSSENYLKYEGGIYSSEWF
WAKALFVLRHDAEVRQAAYSWVEHCDWITALMTGTSHPKVFKAGRCAAGHKVMWHESWNGYPPNDFFVGIDPLLDGLRDK
LPLETCTSDKVCGQLTPEWAQHLGLSTEVIVSFGSFDCHAGAVGANVKPGVLTKVMGTSTCDITVASYEDIGERCIKGIC
GQVDGSVLPGMIGLEAGQSAFGDLYAWFRDLTAWPMQQLDTSVLFDENIKAKLIQQLESETLTMLGNAAAKIPVGETGIV
ALDWINGRRTPDADQSVAMAITGLTMGSQAPQVFKALVEASAYGARAIIERFKQEGVCIDHVVTIGGISKKSDFIMQTCA
DVWNCNIDVLESEQSCALGAAIYAATAAGVYPDVLSAQAAMASNVAKTYQPNPENAEKYQALYQGYLALGHYVDGAK

Sequences:

>Translated_557_residues
MSNVLGAYALGLDYGSDSVRALLVDTQTGAEVATNVVYYPRWKKGLFCEPAKNQFRQHPLDYIESLIEVVQGLWAKAPSG
AAQRVCGLSVDTTGSTPIAVDESGVALALKPEFENNPNAMFLLWKDHSAIIEAKQITAAANDSSENYLKYEGGIYSSEWF
WAKALFVLRHDAEVRQAAYSWVEHCDWITALMTGTSHPKVFKAGRCAAGHKVMWHESWNGYPPNDFFVGIDPLLDGLRDK
LPLETCTSDKVCGQLTPEWAQHLGLSTEVIVSFGSFDCHAGAVGANVKPGVLTKVMGTSTCDITVASYEDIGERCIKGIC
GQVDGSVLPGMIGLEAGQSAFGDLYAWFRDLTAWPMQQLDTSVLFDENIKAKLIQQLESETLTMLGNAAAKIPVGETGIV
ALDWINGRRTPDADQSVAMAITGLTMGSQAPQVFKALVEASAYGARAIIERFKQEGVCIDHVVTIGGISKKSDFIMQTCA
DVWNCNIDVLESEQSCALGAAIYAATAAGVYPDVLSAQAAMASNVAKTYQPNPENAEKYQALYQGYLALGHYVDGAK
>Mature_556_residues
SNVLGAYALGLDYGSDSVRALLVDTQTGAEVATNVVYYPRWKKGLFCEPAKNQFRQHPLDYIESLIEVVQGLWAKAPSGA
AQRVCGLSVDTTGSTPIAVDESGVALALKPEFENNPNAMFLLWKDHSAIIEAKQITAAANDSSENYLKYEGGIYSSEWFW
AKALFVLRHDAEVRQAAYSWVEHCDWITALMTGTSHPKVFKAGRCAAGHKVMWHESWNGYPPNDFFVGIDPLLDGLRDKL
PLETCTSDKVCGQLTPEWAQHLGLSTEVIVSFGSFDCHAGAVGANVKPGVLTKVMGTSTCDITVASYEDIGERCIKGICG
QVDGSVLPGMIGLEAGQSAFGDLYAWFRDLTAWPMQQLDTSVLFDENIKAKLIQQLESETLTMLGNAAAKIPVGETGIVA
LDWINGRRTPDADQSVAMAITGLTMGSQAPQVFKALVEASAYGARAIIERFKQEGVCIDHVVTIGGISKKSDFIMQTCAD
VWNCNIDVLESEQSCALGAAIYAATAAGVYPDVLSAQAAMASNVAKTYQPNPENAEKYQALYQGYLALGHYVDGAK

Specific function: Unknown

COG id: COG1069

COG function: function code C; Ribulose kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulokinase family [H]

Homologues:

Organism=Homo sapiens, GI164663828, Length=570, Percent_Identity=26.140350877193, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI164663830, Length=594, Percent_Identity=25.4208754208754, Blast_Score=99, Evalue=7e-21,
Organism=Escherichia coli, GI1786249, Length=542, Percent_Identity=51.8450184501845, Blast_Score=557, Evalue=1e-160,
Organism=Drosophila melanogaster, GI24657106, Length=579, Percent_Identity=26.0794473229706, Blast_Score=103, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24657102, Length=579, Percent_Identity=26.0794473229706, Blast_Score=103, Evalue=4e-22,
Organism=Drosophila melanogaster, GI21356323, Length=454, Percent_Identity=26.8722466960352, Blast_Score=87, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000577
- InterPro:   IPR018485
- InterPro:   IPR018484
- InterPro:   IPR005929 [H]

Pfam domain/function: PF02782 FGGY_C; PF00370 FGGY_N [H]

EC number: =2.7.1.16 [H]

Molecular weight: Translated: 60161; Mature: 60029

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNVLGAYALGLDYGSDSVRALLVDTQTGAEVATNVVYYPRWKKGLFCEPAKNQFRQHPL
CCCCCEEHEEECCCCCCCEEEEEEECCCCHHHHHCCEEECCCCCCCCCCHHHHHHHCCCH
DYIESLIEVVQGLWAKAPSGAAQRVCGLSVDTTGSTPIAVDESGVALALKPEFENNPNAM
HHHHHHHHHHHHHHCCCCCCHHHHHHCCEECCCCCCCEEECCCCEEEEECCCCCCCCCEE
FLLWKDHSAIIEAKQITAAANDSSENYLKYEGGIYSSEWFWAKALFVLRHDAEVRQAAYS
EEEEECCCHHHHHHHHEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHH
WVEHCDWITALMTGTSHPKVFKAGRCAAGHKVMWHESWNGYPPNDFFVGIDPLLDGLRDK
HHHHHHHHHHHHCCCCCCCEEECCCCCCCCEEEEECCCCCCCCCCCEEEHHHHHHHHHHC
LPLETCTSDKVCGQLTPEWAQHLGLSTEVIVSFGSFDCHAGAVGANVKPGVLTKVMGTST
CCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCC
CDITVASYEDIGERCIKGICGQVDGSVLPGMIGLEAGQSAFGDLYAWFRDLTAWPMQQLD
EEEEEECHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCHHHCC
TSVLFDENIKAKLIQQLESETLTMLGNAAAKIPVGETGIVALDWINGRRTPDADQSVAMA
CHHEECCCHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEEEEEECCCCCCCCCCCCCEEE
ITGLTMGSQAPQVFKALVEASAYGARAIIERFKQEGVCIDHVVTIGGISKKSDFIMQTCA
EEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEHEEEECCCCCCHHHHHHHHH
DVWNCNIDVLESEQSCALGAAIYAATAAGVYPDVLSAQAAMASNVAKTYQPNPENAEKYQ
HHHCCCEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
ALYQGYLALGHYVDGAK
HHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SNVLGAYALGLDYGSDSVRALLVDTQTGAEVATNVVYYPRWKKGLFCEPAKNQFRQHPL
CCCCEEHEEECCCCCCCEEEEEEECCCCHHHHHCCEEECCCCCCCCCCHHHHHHHCCCH
DYIESLIEVVQGLWAKAPSGAAQRVCGLSVDTTGSTPIAVDESGVALALKPEFENNPNAM
HHHHHHHHHHHHHHCCCCCCHHHHHHCCEECCCCCCCEEECCCCEEEEECCCCCCCCCEE
FLLWKDHSAIIEAKQITAAANDSSENYLKYEGGIYSSEWFWAKALFVLRHDAEVRQAAYS
EEEEECCCHHHHHHHHEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHH
WVEHCDWITALMTGTSHPKVFKAGRCAAGHKVMWHESWNGYPPNDFFVGIDPLLDGLRDK
HHHHHHHHHHHHCCCCCCCEEECCCCCCCCEEEEECCCCCCCCCCCEEEHHHHHHHHHHC
LPLETCTSDKVCGQLTPEWAQHLGLSTEVIVSFGSFDCHAGAVGANVKPGVLTKVMGTST
CCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCC
CDITVASYEDIGERCIKGICGQVDGSVLPGMIGLEAGQSAFGDLYAWFRDLTAWPMQQLD
EEEEEECHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCHHHCC
TSVLFDENIKAKLIQQLESETLTMLGNAAAKIPVGETGIVALDWINGRRTPDADQSVAMA
CHHEECCCHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEEEEEECCCCCCCCCCCCCEEE
ITGLTMGSQAPQVFKALVEASAYGARAIIERFKQEGVCIDHVVTIGGISKKSDFIMQTCA
EEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEHEEEECCCCCCHHHHHHHHH
DVWNCNIDVLESEQSCALGAAIYAATAAGVYPDVLSAQAAMASNVAKTYQPNPENAEKYQ
HHHCCCEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
ALYQGYLALGHYVDGAK
HHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA