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The map label for this gene is araD [H]

Identifier: 117920509

GI number: 117920509

Start: 2472373

End: 2473068

Strand: Direct

Name: araD [H]

Synonym: Shewana3_2065

Alternate gene names: 117920509

Gene position: 2472373-2473068 (Clockwise)

Preceding gene: 117920508

Following gene: 117920510

Centisome position: 49.72

GC content: 49.14

Gene sequence:

>696_bases
ATGTCTTTTTTAGAGCTAAAACGCGAAGTATACGAAGCCAACATGGAGCTTGAGAAGCGCAAACTGGTGACTTACACCTT
TGGCAACGTTTCACAAATTGATCGCCAACTCGGCGTCATTGGTATCAAGCCCAGCGGCGTGCCCTATGAAGATTTGAAGG
TTGAAGACATTGTGATTGTTGACCTTGAGAATCAAATCGTAGAAGGGCGCATGCGTCCTTCATCCGATACCAAGACACAC
ACCTATTTGTATCGCCAGTGGCAGAGTATTGGTGGCATTACCCATACCCACTCGACCTACGCCACTGCCTGGGCGCAGGC
ACAGATTGCGATTCCCTGTTTAGGTACAACACAGGCCGATTATGTGTACGGTGAAATCCCATGCACAGCGGTGATGCGCA
ACGATCAGATCAGCCGCGACTACGAAGAAGAAACCGGCGTGCAGATCCTCGATTGCTTCGCCGACCGAGATCCTAACGAG
TCGCCCATGGTAATCGTTGCAGGTCATGCACCGTTCACTTGGGGCGCGAATGCGGCTAAATCCGTATATCACGCCGTGTT
GCTCGAAGAAATCGCTCGGATGGCGTATCTCACCAAAACATTATCACCAGGTATCAGTCAGTTAAAACAAGAGCTTATTG
ATAAGCACTATTTGCGTAAGCATGGAAAAGACGCTTATTACGGCCAAAGCAAGTAA

Upstream 100 bases:

>100_bases
GCGAAAACCTATCAACCAAATCCAGAAAACGCTGAGAAATATCAAGCGCTTTACCAAGGGTACTTAGCCCTTGGCCACTA
TGTTGATGGAGCGAAATAAG

Downstream 100 bases:

>100_bases
TTGCCAGTCGGGTCTCATTTCAAACTAGAGAGAGTAATATGAAAGCCTTCAAACAAAAACAAGTGTGGTTTATCACGGGT
TCGCAGGATTTATACGGCCC

Product: L-ribulose-5-phosphate 4-epimerase

Products: NA

Alternate protein names: Phosphoribulose isomerase [H]

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MSFLELKREVYEANMELEKRKLVTYTFGNVSQIDRQLGVIGIKPSGVPYEDLKVEDIVIVDLENQIVEGRMRPSSDTKTH
TYLYRQWQSIGGITHTHSTYATAWAQAQIAIPCLGTTQADYVYGEIPCTAVMRNDQISRDYEEETGVQILDCFADRDPNE
SPMVIVAGHAPFTWGANAAKSVYHAVLLEEIARMAYLTKTLSPGISQLKQELIDKHYLRKHGKDAYYGQSK

Sequences:

>Translated_231_residues
MSFLELKREVYEANMELEKRKLVTYTFGNVSQIDRQLGVIGIKPSGVPYEDLKVEDIVIVDLENQIVEGRMRPSSDTKTH
TYLYRQWQSIGGITHTHSTYATAWAQAQIAIPCLGTTQADYVYGEIPCTAVMRNDQISRDYEEETGVQILDCFADRDPNE
SPMVIVAGHAPFTWGANAAKSVYHAVLLEEIARMAYLTKTLSPGISQLKQELIDKHYLRKHGKDAYYGQSK
>Mature_230_residues
SFLELKREVYEANMELEKRKLVTYTFGNVSQIDRQLGVIGIKPSGVPYEDLKVEDIVIVDLENQIVEGRMRPSSDTKTHT
YLYRQWQSIGGITHTHSTYATAWAQAQIAIPCLGTTQADYVYGEIPCTAVMRNDQISRDYEEETGVQILDCFADRDPNES
PMVIVAGHAPFTWGANAAKSVYHAVLLEEIARMAYLTKTLSPGISQLKQELIDKHYLRKHGKDAYYGQSK

Specific function: Probable Pentulose-5-Phosphate-4-Epimerase. Probably Involved In A Metabolic Pathway With Sgah And Sgau. [C]

COG id: COG0235

COG function: function code G; Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aldolase class II family. AraD/FucA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790642, Length=225, Percent_Identity=50.6666666666667, Blast_Score=262, Evalue=1e-71,
Organism=Escherichia coli, GI1786247, Length=228, Percent_Identity=51.7543859649123, Blast_Score=240, Evalue=4e-65,
Organism=Escherichia coli, GI1790008, Length=228, Percent_Identity=48.6842105263158, Blast_Score=232, Evalue=2e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001303
- InterPro:   IPR004661 [H]

Pfam domain/function: PF00596 Aldolase_II [H]

EC number: =5.1.3.4 [H]

Molecular weight: Translated: 26125; Mature: 25994

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFLELKREVYEANMELEKRKLVTYTFGNVSQIDRQLGVIGIKPSGVPYEDLKVEDIVIV
CCHHHHHHHHHHHCCCHHHEEEEEEECCCHHHHHHHHCEEEECCCCCCCCCCEECEEEEE
DLENQIVEGRMRPSSDTKTHTYLYRQWQSIGGITHTHSTYATAWAQAQIAIPCLGTTQAD
ECCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCEEECCCHHHHHHEEEEEEEEECCCCCCC
YVYGEIPCTAVMRNDQISRDYEEETGVQILDCFADRDPNESPMVIVAGHAPFTWGANAAK
EEEECCCEEEEECCCCCCCCHHHHCCCEEEEHHHCCCCCCCCEEEEECCCCCCCCCHHHH
SVYHAVLLEEIARMAYLTKTLSPGISQLKQELIDKHYLRKHGKDAYYGQSK
HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SFLELKREVYEANMELEKRKLVTYTFGNVSQIDRQLGVIGIKPSGVPYEDLKVEDIVIV
CHHHHHHHHHHHCCCHHHEEEEEEECCCHHHHHHHHCEEEECCCCCCCCCCEECEEEEE
DLENQIVEGRMRPSSDTKTHTYLYRQWQSIGGITHTHSTYATAWAQAQIAIPCLGTTQAD
ECCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCEEECCCHHHHHHEEEEEEEEECCCCCCC
YVYGEIPCTAVMRNDQISRDYEEETGVQILDCFADRDPNESPMVIVAGHAPFTWGANAAK
EEEECCCEEEEECCCCCCCCHHHHCCCEEEEHHHCCCCCCCCEEEEECCCCCCCCCHHHH
SVYHAVLLEEIARMAYLTKTLSPGISQLKQELIDKHYLRKHGKDAYYGQSK
HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA