Click here to switch to the map view.

The map label for this gene is yccA [C]

Identifier: 117920504

GI number: 117920504

Start: 2466015

End: 2466674

Strand: Reverse

Name: yccA [C]

Synonym: Shewana3_2060

Alternate gene names: 117920504

Gene position: 2466674-2466015 (Counterclockwise)

Preceding gene: 117920505

Following gene: 117920503

Centisome position: 49.61

GC content: 46.52

Gene sequence:

>660_bases
ATGACTCAGCAAACCTTGTACTCAGCTAGTGCATCCACCCTAGAAGTGAATAAACTTCTTAAAAATACCTATTTATTGTT
GGCCATGACCCTCGCCTTCTCGGCATTGTGTGCAGGCTTAGCGATGGCACTCAATATCAGCCCTCTGATGTCACTCGGTT
TATCTATCGGTGGTTTAGTGCTGTTGTTCGTTACCCTACGCAAAGCCGACTCCGCTGCGGGCATCTTCTGGGTATTTGCA
TTTACCGGTATGGAAGGCGCCTCATTAGGTTATATGCTTAACCACTACGCCGGCATGACCAATGGCTCTGAGCTTATCAT
GCAAGCTTTAGGATTAACCTCGGTTATCTTTATTGCACTCTCGGCCTATGCAGTCACAACGAAGAAAGATTTCTCTTTCC
TACGTGGTTTCCTGTTCGCCGGATTGATTGTGGTGATCGCTGCTGCGCTGATTAACATTTTCGTGGGTAACAGTGTGGCC
TTTATGGCGATTAACGCGGGTCTTGCGCTGTTAATGACCGGCTTTATCTTGTTCGATACTAGCCGTATCGTGAATGGCGG
CGAGACCAACTATATCCGCGCCACTATCTCCTTGTATCTGGACTTTTTAAACCTGTTCATTGCCATTTTGCATTTGCTTG
GCATTGGTAACGATGATTAA

Upstream 100 bases:

>100_bases
ATTCACCCAGTTTTACTGGATTTACGATATTAATGGGAACTCTCGTCCCCGTTAAAAATCAAAATGATCAGTTTGGATTT
AAAAGCTAATGGAGAAAGAT

Downstream 100 bases:

>100_bases
TCCCCTTTTCGGGAAACTTACGCTAAAATGGCCCTACTTTTAGGGCCATTTTTTTTATGATGAGCAAATTTATTATCCAA
GTAAACGGGCCAGCCTATGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 218

Protein sequence:

>219_residues
MTQQTLYSASASTLEVNKLLKNTYLLLAMTLAFSALCAGLAMALNISPLMSLGLSIGGLVLLFVTLRKADSAAGIFWVFA
FTGMEGASLGYMLNHYAGMTNGSELIMQALGLTSVIFIALSAYAVTTKKDFSFLRGFLFAGLIVVIAAALINIFVGNSVA
FMAINAGLALLMTGFILFDTSRIVNGGETNYIRATISLYLDFLNLFIAILHLLGIGNDD

Sequences:

>Translated_219_residues
MTQQTLYSASASTLEVNKLLKNTYLLLAMTLAFSALCAGLAMALNISPLMSLGLSIGGLVLLFVTLRKADSAAGIFWVFA
FTGMEGASLGYMLNHYAGMTNGSELIMQALGLTSVIFIALSAYAVTTKKDFSFLRGFLFAGLIVVIAAALINIFVGNSVA
FMAINAGLALLMTGFILFDTSRIVNGGETNYIRATISLYLDFLNLFIAILHLLGIGNDD
>Mature_218_residues
TQQTLYSASASTLEVNKLLKNTYLLLAMTLAFSALCAGLAMALNISPLMSLGLSIGGLVLLFVTLRKADSAAGIFWVFAF
TGMEGASLGYMLNHYAGMTNGSELIMQALGLTSVIFIALSAYAVTTKKDFSFLRGFLFAGLIVVIAAALINIFVGNSVAF
MAINAGLALLMTGFILFDTSRIVNGGETNYIRATISLYLDFLNLFIAILHLLGIGNDD

Specific function: Unknown

COG id: COG0670

COG function: function code R; Integral membrane protein, interacts with FtsH

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BI1 family [H]

Homologues:

Organism=Homo sapiens, GI116812579, Length=175, Percent_Identity=30.8571428571429, Blast_Score=69, Evalue=3e-12,
Organism=Escherichia coli, GI1787205, Length=211, Percent_Identity=45.9715639810426, Blast_Score=155, Evalue=2e-39,
Organism=Drosophila melanogaster, GI45551091, Length=147, Percent_Identity=30.6122448979592, Blast_Score=64, Evalue=6e-11,
Organism=Drosophila melanogaster, GI17647735, Length=147, Percent_Identity=30.6122448979592, Blast_Score=64, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24653225, Length=147, Percent_Identity=30.6122448979592, Blast_Score=64, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24653227, Length=147, Percent_Identity=30.6122448979592, Blast_Score=64, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24653221, Length=147, Percent_Identity=30.6122448979592, Blast_Score=64, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24653223, Length=147, Percent_Identity=30.6122448979592, Blast_Score=64, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006214 [H]

Pfam domain/function: PF01027 UPF0005 [H]

EC number: NA

Molecular weight: Translated: 23296; Mature: 23165

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQQTLYSASASTLEVNKLLKNTYLLLAMTLAFSALCAGLAMALNISPLMSLGLSIGGLV
CCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLFVTLRKADSAAGIFWVFAFTGMEGASLGYMLNHYAGMTNGSELIMQALGLTSVIFIAL
HHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
SAYAVTTKKDFSFLRGFLFAGLIVVIAAALINIFVGNSVAFMAINAGLALLMTGFILFDT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHH
SRIVNGGETNYIRATISLYLDFLNLFIAILHLLGIGNDD
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TQQTLYSASASTLEVNKLLKNTYLLLAMTLAFSALCAGLAMALNISPLMSLGLSIGGLV
CCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLFVTLRKADSAAGIFWVFAFTGMEGASLGYMLNHYAGMTNGSELIMQALGLTSVIFIAL
HHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
SAYAVTTKKDFSFLRGFLFAGLIVVIAAALINIFVGNSVAFMAINAGLALLMTGFILFDT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHH
SRIVNGGETNYIRATISLYLDFLNLFIAILHLLGIGNDD
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]