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The map label for this gene is ydhB [H]

Identifier: 117920505

GI number: 117920505

Start: 2466934

End: 2467845

Strand: Reverse

Name: ydhB [H]

Synonym: Shewana3_2061

Alternate gene names: 117920505

Gene position: 2467845-2466934 (Counterclockwise)

Preceding gene: 117920507

Following gene: 117920504

Centisome position: 49.63

GC content: 51.64

Gene sequence:

>912_bases
ATGTCAGCTATGCTCTCGGAACAAGCGTTAGAACTCATTGATATCGTGGCCCGGGTGGGGAGTTTTACGGCGGCAGCCAA
TCGACTGCACAAGGTCCCTTCTGCGGTCAGTTATGCCGTTAAACAAATCGAAGAAGAACTTGGTGTAGTGTTATTTGAGC
GCCACCACCGCAGCGTGACCTTGACCCCCGCGGGAGAGCATTTTGTTAAGCAAGCCAGAAACTTGCTGACTCAAATGGAT
GAGATGAAACGCGGCACCCAGCGTGTGGCCAACGGCTGGCAACCCACGCTGTCTATCGCCTTAGATAACATAGTGCGCGC
CGACAGAATTAGCGTATTAATCGCCGACTTTTACCGTCATTTCCAAGATATCGAGCTCATCATCCGCATCGAGGTCTTTA
ACGGCGTGTGGGAGGCGCTTGCGACTGGTCGCAGTGATATCGCCATTGGCGCAACCACTGCTATCCCTGTGGGGGGCGTA
TACCAATATAAGGACATGGGCGATATTCAATGGGCATTTTTGGTGAGTAAAAACCATCCTTTAGCCAGTATTGATCGCCC
CTTGACCGATGATGAACTGCGTCCCTTCCCCTCCATTTGTTTGGAAGATACCTCGCGGGAAATTCCTAAGCGCATGACCT
GGTTATTGGAGAATCAACGCAGACTCGTGGTGCCGGATTGGATCCGCGCGATTAACTGCTTTAGAGAGGGATTAGGCATC
GGCTATATGCCCGTTCATTTAGCCAGCGTATTTATCAAAGCGGGCGCCTTGGTTGAAAAGCAGCTTGAAAATCCTAAATT
AACCAGCCCCTGCTGCCTAGCTTGGAACGCCGATAAGATGTCGCCCGCCCTCGCCTGGGTGCTCGACTACTTAGGAGATA
CCGATAAGTTACACCGAGAATGGCTGGCGTAA

Upstream 100 bases:

>100_bases
ATCATGTCAAAAGACTTAAGGCGTGCAGTCTAAATACTTGTTAATTTGATTGGAAACGTTTATTTTTGACAGATGCTATC
AATTATTTTCATCACAATGG

Downstream 100 bases:

>100_bases
TATTACTTCATTACCTCAGGATTAAGCTTGTTTTAAAGTCTTTGTGTTGCACTGGTGTAACGAAATACGGCTGAATCGTT
TGGTAGCGCAGAAAAATCAG

Product: putative DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 302

Protein sequence:

>303_residues
MSAMLSEQALELIDIVARVGSFTAAANRLHKVPSAVSYAVKQIEEELGVVLFERHHRSVTLTPAGEHFVKQARNLLTQMD
EMKRGTQRVANGWQPTLSIALDNIVRADRISVLIADFYRHFQDIELIIRIEVFNGVWEALATGRSDIAIGATTAIPVGGV
YQYKDMGDIQWAFLVSKNHPLASIDRPLTDDELRPFPSICLEDTSREIPKRMTWLLENQRRLVVPDWIRAINCFREGLGI
GYMPVHLASVFIKAGALVEKQLENPKLTSPCCLAWNADKMSPALAWVLDYLGDTDKLHREWLA

Sequences:

>Translated_303_residues
MSAMLSEQALELIDIVARVGSFTAAANRLHKVPSAVSYAVKQIEEELGVVLFERHHRSVTLTPAGEHFVKQARNLLTQMD
EMKRGTQRVANGWQPTLSIALDNIVRADRISVLIADFYRHFQDIELIIRIEVFNGVWEALATGRSDIAIGATTAIPVGGV
YQYKDMGDIQWAFLVSKNHPLASIDRPLTDDELRPFPSICLEDTSREIPKRMTWLLENQRRLVVPDWIRAINCFREGLGI
GYMPVHLASVFIKAGALVEKQLENPKLTSPCCLAWNADKMSPALAWVLDYLGDTDKLHREWLA
>Mature_302_residues
SAMLSEQALELIDIVARVGSFTAAANRLHKVPSAVSYAVKQIEEELGVVLFERHHRSVTLTPAGEHFVKQARNLLTQMDE
MKRGTQRVANGWQPTLSIALDNIVRADRISVLIADFYRHFQDIELIIRIEVFNGVWEALATGRSDIAIGATTAIPVGGVY
QYKDMGDIQWAFLVSKNHPLASIDRPLTDDELRPFPSICLEDTSREIPKRMTWLLENQRRLVVPDWIRAINCFREGLGIG
YMPVHLASVFIKAGALVEKQLENPKLTSPCCLAWNADKMSPALAWVLDYLGDTDKLHREWLA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787949, Length=299, Percent_Identity=54.5150501672241, Blast_Score=352, Evalue=2e-98,
Organism=Escherichia coli, GI1786508, Length=309, Percent_Identity=32.0388349514563, Blast_Score=187, Evalue=1e-48,
Organism=Escherichia coli, GI1786713, Length=273, Percent_Identity=34.4322344322344, Blast_Score=181, Evalue=6e-47,
Organism=Escherichia coli, GI87082024, Length=277, Percent_Identity=30.6859205776173, Blast_Score=161, Evalue=5e-41,
Organism=Escherichia coli, GI1789492, Length=286, Percent_Identity=31.1188811188811, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1787806, Length=160, Percent_Identity=28.75, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI157672245, Length=167, Percent_Identity=32.3353293413174, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790262, Length=188, Percent_Identity=25.531914893617, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788748, Length=222, Percent_Identity=25.2252252252252, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34129; Mature: 33998

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAMLSEQALELIDIVARVGSFTAAANRLHKVPSAVSYAVKQIEEELGVVLFERHHRSVT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEE
LTPAGEHFVKQARNLLTQMDEMKRGTQRVANGWQPTLSIALDNIVRADRISVLIADFYRH
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FQDIELIIRIEVFNGVWEALATGRSDIAIGATTAIPVGGVYQYKDMGDIQWAFLVSKNHP
HHCEEEEEEEHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEECCCCCEEEEEEEECCCC
LASIDRPLTDDELRPFPSICLEDTSREIPKRMTWLLENQRRLVVPDWIRAINCFREGLGI
CHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHCCCC
GYMPVHLASVFIKAGALVEKQLENPKLTSPCCLAWNADKMSPALAWVLDYLGDTDKLHRE
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCHHHHHHH
WLA
HCC
>Mature Secondary Structure 
SAMLSEQALELIDIVARVGSFTAAANRLHKVPSAVSYAVKQIEEELGVVLFERHHRSVT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEE
LTPAGEHFVKQARNLLTQMDEMKRGTQRVANGWQPTLSIALDNIVRADRISVLIADFYRH
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FQDIELIIRIEVFNGVWEALATGRSDIAIGATTAIPVGGVYQYKDMGDIQWAFLVSKNHP
HHCEEEEEEEHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEECCCCCEEEEEEEECCCC
LASIDRPLTDDELRPFPSICLEDTSREIPKRMTWLLENQRRLVVPDWIRAINCFREGLGI
CHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHCCCC
GYMPVHLASVFIKAGALVEKQLENPKLTSPCCLAWNADKMSPALAWVLDYLGDTDKLHRE
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCHHHHHHH
WLA
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]