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The map label for this gene is cmoB [H]

Identifier: 117920395

GI number: 117920395

Start: 2319245

End: 2320237

Strand: Reverse

Name: cmoB [H]

Synonym: Shewana3_1950

Alternate gene names: 117920395

Gene position: 2320237-2319245 (Counterclockwise)

Preceding gene: 117920396

Following gene: 117920394

Centisome position: 46.66

GC content: 49.75

Gene sequence:

>993_bases
GTGATCAGTTTCAGCTCCTTTTACCAACAAATTGCCGATTCCAATTTGCAGCATTGGCTCGAGACTTTGCCAGCCATCCT
CGGCAAATGGCAAAGAGAACATAAACACGGCAACTTACCCAAGTGGGAAAAAGTGCTCAATAAGCTGCACTATCCTGCCC
CAGATCGCGTTGACTTTGTCAGCAGCGTCACCGTCGGCACTGGCGAGCAACTCACGCCCGGCGAAAAGGAAAAGCTTGAG
AACCTACTGCGCTTGTTTATGCCTTGGCGCAAAGGCCCATTTCATATCCACGGCATTCATATCGATACCGAATGGCGCAG
CGATTGGAAGTGGGATCGCGTGAGCCCACATATTTCTCCTTTGCAAAATCGCACTGTGCTCGATGTCGGCTGTGGCAGCG
GCTATCACATGTGGCGCATGCTTGGTGCGGGCGCAAAACGGGTGGTGGGCATCGACCCTTCACCGTTGTTTTTATGCCAA
TTCGAAGCCGTTAAGCGCCTGAGCGGTGAAAATCACCCGGTGCACTTACTGCCACTTGGCATTGAAGAGCTGCCACCACT
GGATGCATTCGATACGGTTTTCTCCATGGGCGTCTTGTATCACAGACGTTCGCCTATTGATCACTTGTTACAATTACGTG
ATCAGTTACGCATGGGTGGGGAATTAGTGTTAGAGACTTTAGTAATAGATGGTGATGAAAACGCCGTACTCGTCCCTCAA
GATAGATATGGGAAAATGAATAATGTATGGTTTATTCCATCCGTCGCGGCCCTGATGCTCTGGCTAAAGAAGTGTGATTT
CACAGACATACGTTGTGTCGACACCGATGTCACCGCCCTAGCAGAACAGCGCCGAACCGATTGGATGCCGAATGAGTCAC
TGGTTGAATATCTTGACCCTAACGATATCACTAAGACTATCGAGGGTTACCCCGCGCCGAAACGCGCAACGATTATTGCG
GTGAAAAATCAACCCAATCAAGATTTGACCTAA

Upstream 100 bases:

>100_bases
ATACCTTAACTCTCCACCAGCAACGTTTGACTCGCCAAGGGTTTAGCCACTTTAGCTTGTGGTTCCAATGTTTTAATTTC
TCTTCCATGGTGGCCATCAA

Downstream 100 bases:

>100_bases
CGAGTTAGCTCCAGTGGCCTAATACGCTTATGCCTAGGTAAACCCTAGGCATAAAACCCGTTTTAACGCCAATAGGAAGT
ACTATGCTAAAGCAGTTGAT

Product: putative methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MISFSSFYQQIADSNLQHWLETLPAILGKWQREHKHGNLPKWEKVLNKLHYPAPDRVDFVSSVTVGTGEQLTPGEKEKLE
NLLRLFMPWRKGPFHIHGIHIDTEWRSDWKWDRVSPHISPLQNRTVLDVGCGSGYHMWRMLGAGAKRVVGIDPSPLFLCQ
FEAVKRLSGENHPVHLLPLGIEELPPLDAFDTVFSMGVLYHRRSPIDHLLQLRDQLRMGGELVLETLVIDGDENAVLVPQ
DRYGKMNNVWFIPSVAALMLWLKKCDFTDIRCVDTDVTALAEQRRTDWMPNESLVEYLDPNDITKTIEGYPAPKRATIIA
VKNQPNQDLT

Sequences:

>Translated_330_residues
MISFSSFYQQIADSNLQHWLETLPAILGKWQREHKHGNLPKWEKVLNKLHYPAPDRVDFVSSVTVGTGEQLTPGEKEKLE
NLLRLFMPWRKGPFHIHGIHIDTEWRSDWKWDRVSPHISPLQNRTVLDVGCGSGYHMWRMLGAGAKRVVGIDPSPLFLCQ
FEAVKRLSGENHPVHLLPLGIEELPPLDAFDTVFSMGVLYHRRSPIDHLLQLRDQLRMGGELVLETLVIDGDENAVLVPQ
DRYGKMNNVWFIPSVAALMLWLKKCDFTDIRCVDTDVTALAEQRRTDWMPNESLVEYLDPNDITKTIEGYPAPKRATIIA
VKNQPNQDLT
>Mature_330_residues
MISFSSFYQQIADSNLQHWLETLPAILGKWQREHKHGNLPKWEKVLNKLHYPAPDRVDFVSSVTVGTGEQLTPGEKEKLE
NLLRLFMPWRKGPFHIHGIHIDTEWRSDWKWDRVSPHISPLQNRTVLDVGCGSGYHMWRMLGAGAKRVVGIDPSPLFLCQ
FEAVKRLSGENHPVHLLPLGIEELPPLDAFDTVFSMGVLYHRRSPIDHLLQLRDQLRMGGELVLETLVIDGDENAVLVPQ
DRYGKMNNVWFIPSVAALMLWLKKCDFTDIRCVDTDVTALAEQRRTDWMPNESLVEYLDPNDITKTIEGYPAPKRATIIA
VKNQPNQDLT

Specific function: Catalyzes the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at position 34 in tRNA [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. CmoB family [H]

Homologues:

Organism=Escherichia coli, GI1788178, Length=322, Percent_Identity=63.6645962732919, Blast_Score=431, Evalue=1e-122,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010017 [H]

Pfam domain/function: PF08003 Methyltransf_9 [H]

EC number: NA

Molecular weight: Translated: 37825; Mature: 37825

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISFSSFYQQIADSNLQHWLETLPAILGKWQREHKHGNLPKWEKVLNKLHYPAPDRVDFV
CCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHH
SSVTVGTGEQLTPGEKEKLENLLRLFMPWRKGPFHIHGIHIDTEWRSDWKWDRVSPHISP
HEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCC
LQNRTVLDVGCGSGYHMWRMLGAGAKRVVGIDPSPLFLCQFEAVKRLSGENHPVHLLPLG
CCCCEEEEECCCCCHHHHHHHCCCCCEEEECCCCCEEEEEHHHHHHHCCCCCCEEEEECC
IEELPPLDAFDTVFSMGVLYHRRSPIDHLLQLRDQLRMGGELVLETLVIDGDENAVLVPQ
HHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHEEEEEEEEECCCCEEEECH
DRYGKMNNVWFIPSVAALMLWLKKCDFTDIRCVDTDVTALAEQRRTDWMPNESLVEYLDP
HHCCCCCCEEEHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHCCCCCCHHHHHHCCC
NDITKTIEGYPAPKRATIIAVKNQPNQDLT
CHHHHHHCCCCCCCCEEEEEEECCCCCCCC
>Mature Secondary Structure
MISFSSFYQQIADSNLQHWLETLPAILGKWQREHKHGNLPKWEKVLNKLHYPAPDRVDFV
CCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHH
SSVTVGTGEQLTPGEKEKLENLLRLFMPWRKGPFHIHGIHIDTEWRSDWKWDRVSPHISP
HEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCC
LQNRTVLDVGCGSGYHMWRMLGAGAKRVVGIDPSPLFLCQFEAVKRLSGENHPVHLLPLG
CCCCEEEEECCCCCHHHHHHHCCCCCEEEECCCCCEEEEEHHHHHHHCCCCCCEEEEECC
IEELPPLDAFDTVFSMGVLYHRRSPIDHLLQLRDQLRMGGELVLETLVIDGDENAVLVPQ
HHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHEEEEEEEEECCCCEEEECH
DRYGKMNNVWFIPSVAALMLWLKKCDFTDIRCVDTDVTALAEQRRTDWMPNESLVEYLDP
HHCCCCCCEEEHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHCCCCCCHHHHHHCCC
NDITKTIEGYPAPKRATIIAVKNQPNQDLT
CHHHHHHCCCCCCCCEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA