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The map label for this gene is yeaM [H]

Identifier: 117920368

GI number: 117920368

Start: 2286178

End: 2286990

Strand: Direct

Name: yeaM [H]

Synonym: Shewana3_1923

Alternate gene names: 117920368

Gene position: 2286178-2286990 (Clockwise)

Preceding gene: 117920366

Following gene: 117920371

Centisome position: 45.98

GC content: 50.8

Gene sequence:

>813_bases
GTGTCAGATGTTATTTCCAAAGCGACAATGTTGGCACCCAGCCAATTTGCATTCACGTTAGACGCAAATCGTCCCGTATT
GAGTAATGCGCGCAATCTCGAGGCCGAAATGGGCGTCGAGCCCCATTCTCACCCTCGGGGGCAGTTACTTTGGGCGGCAA
AAGGGATTTTACGGGTTCAGAGCGATAATGCGGTTTGGGTGGTGCCATCGACCCATGCCGTGTGGCTCCCCAGTGGTTGC
CGGCATCAAATTAACTGTGAAACCCAAGCTCATCTTCGCAATTTATATATCGATCCCAGTTATCGCGTCAGAGTGCAGGA
CACGCAGGTGGTGATGGTTACAATGACGCCGCTAATGCGTGAAATGGTGCTGAAACTATGCCAAGACGCCACAATGGAAC
CAGCCAAGTATTTTCGCTTGGGTTTAAGTGCCATAGACGAGTTAGATGCGCTCGACAGTGTGAATACCTACTTGAATGCG
GGCTCGGATCCGCGTCTTGGTCGAGTGATCCAACTGTTGATCAAAAAACCGCAGGCTGAGTATACCTTGGCCGAATTAGC
TCAAAGTGCGGGGGCGAGTATTCGAACCATAGAACGACTCTTTAAAGCTGAAACTGGGCAGACCTACAGGCAATGGCGCC
AAAGATACCGATTACTCAACTCCCTTGAGCGGTTAACCCAAGGGGAGAGCACAACAAGCGTGGCCCATAGTCTGGGGTAT
TTAAGTGTCAGTAGTTTTAGCGCAGCATTTAAAGCCTTATTTGGTTGCACGCCTCAGGAATACGCCCAAAAAAGCGTGCA
AGCCACGCGGTAG

Upstream 100 bases:

>100_bases
TTTAATACTTAACTTACCCATAGGGGATCACCTTAATATTGCGGGCATTGATATTGCGGCCTAAGATAGCCCAGTTGATA
TGGCGTTTTAAGGTGGTAAT

Downstream 100 bases:

>100_bases
TATTACCATATCTAAATCAAATAGTTACAAAGAAATCTGCTTTGGATAGCTGCAAAGATAGTTCTTTAAGATAGTTCCTT
AAGATTGCTCTTAAGGTTAG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 269

Protein sequence:

>270_residues
MSDVISKATMLAPSQFAFTLDANRPVLSNARNLEAEMGVEPHSHPRGQLLWAAKGILRVQSDNAVWVVPSTHAVWLPSGC
RHQINCETQAHLRNLYIDPSYRVRVQDTQVVMVTMTPLMREMVLKLCQDATMEPAKYFRLGLSAIDELDALDSVNTYLNA
GSDPRLGRVIQLLIKKPQAEYTLAELAQSAGASIRTIERLFKAETGQTYRQWRQRYRLLNSLERLTQGESTTSVAHSLGY
LSVSSFSAAFKALFGCTPQEYAQKSVQATR

Sequences:

>Translated_270_residues
MSDVISKATMLAPSQFAFTLDANRPVLSNARNLEAEMGVEPHSHPRGQLLWAAKGILRVQSDNAVWVVPSTHAVWLPSGC
RHQINCETQAHLRNLYIDPSYRVRVQDTQVVMVTMTPLMREMVLKLCQDATMEPAKYFRLGLSAIDELDALDSVNTYLNA
GSDPRLGRVIQLLIKKPQAEYTLAELAQSAGASIRTIERLFKAETGQTYRQWRQRYRLLNSLERLTQGESTTSVAHSLGY
LSVSSFSAAFKALFGCTPQEYAQKSVQATR
>Mature_269_residues
SDVISKATMLAPSQFAFTLDANRPVLSNARNLEAEMGVEPHSHPRGQLLWAAKGILRVQSDNAVWVVPSTHAVWLPSGCR
HQINCETQAHLRNLYIDPSYRVRVQDTQVVMVTMTPLMREMVLKLCQDATMEPAKYFRLGLSAIDELDALDSVNTYLNAG
SDPRLGRVIQLLIKKPQAEYTLAELAQSAGASIRTIERLFKAETGQTYRQWRQRYRLLNSLERLTQGESTTSVAHSLGYL
SVSSFSAAFKALFGCTPQEYAQKSVQATR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=222, Percent_Identity=33.7837837837838, Blast_Score=128, Evalue=4e-31,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 30189; Mature: 30058

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDVISKATMLAPSQFAFTLDANRPVLSNARNLEAEMGVEPHSHPRGQLLWAAKGILRVQ
CCHHHHHHHHCCCCCEEEEEECCCCHHCCCCCCHHHCCCCCCCCCCCCEEEEECCEEEEE
SDNAVWVVPSTHAVWLPSGCRHQINCETQAHLRNLYIDPSYRVRVQDTQVVMVTMTPLMR
CCCEEEEEECCCEEECCCCCCCCCCCCHHHHHHHEEECCCEEEEEECCEEEEEEHHHHHH
EMVLKLCQDATMEPAKYFRLGLSAIDELDALDSVNTYLNAGSDPRLGRVIQLLIKKPQAE
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCH
YTLAELAQSAGASIRTIERLFKAETGQTYRQWRQRYRLLNSLERLTQGESTTSVAHSLGY
HHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LSVSSFSAAFKALFGCTPQEYAQKSVQATR
HHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
SDVISKATMLAPSQFAFTLDANRPVLSNARNLEAEMGVEPHSHPRGQLLWAAKGILRVQ
CHHHHHHHHCCCCCEEEEEECCCCHHCCCCCCHHHCCCCCCCCCCCCEEEEECCEEEEE
SDNAVWVVPSTHAVWLPSGCRHQINCETQAHLRNLYIDPSYRVRVQDTQVVMVTMTPLMR
CCCEEEEEECCCEEECCCCCCCCCCCCHHHHHHHEEECCCEEEEEECCEEEEEEHHHHHH
EMVLKLCQDATMEPAKYFRLGLSAIDELDALDSVNTYLNAGSDPRLGRVIQLLIKKPQAE
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCH
YTLAELAQSAGASIRTIERLFKAETGQTYRQWRQRYRLLNSLERLTQGESTTSVAHSLGY
HHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LSVSSFSAAFKALFGCTPQEYAQKSVQATR
HHHHHHHHHHHHHHCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]