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The map label for this gene is ymbA [H]

Identifier: 117920366

GI number: 117920366

Start: 2283895

End: 2284494

Strand: Direct

Name: ymbA [H]

Synonym: Shewana3_1921

Alternate gene names: 117920366

Gene position: 2283895-2284494 (Clockwise)

Preceding gene: 117920365

Following gene: 117920368

Centisome position: 45.93

GC content: 50.0

Gene sequence:

>600_bases
ATGCGTATTTTACTGTTATTGATTGCATTTTTAATGGCGGGCTGTAGCAGTCAGCCCACTCCTCAAACCTATTTTATCGC
CCTGCAACATACGGCAGTTGCAGGTACAACGGATACCAGCCGTGGCGTTATCCGTTCTGGCGAGCCGTGCGCATTAAGGG
TTAATCGGGTGAACTTGGCTGACTATCTCAATACCCATGGTTTGGTTTATCAAACCTCAGCACGGGAGTTGGTCGTAGCA
AAGCAGCATTTATGGGCAGGTTCTTTGGCCGAGCAAATCCAATTTAGGTTAAATAATTTGCTAAGCCAGTCATGCAGCGC
ATCTGCTAGATGGGCCTTAGCAACCGATAGCCCTGCTAAATCCGTCCAACTCGACCTCATTGTGACTGAATTTTATGGCA
GCTATACAGGTGAGGCTGTTGTGGGCGGGCAGTGGCGCCTGATGGATAATACGCAGCAAGTGCTGCGTGAGCAGCCATTC
CAATATCGTGTCTCATTGCCTGAAGAAGGTTATGCGGCTCTCGTCAGCAGCCTAGATAATGGGCTGGTGCAGCTTGCTGA
AGGTATCCGCTTAATGGCGTCGCCGCATACTGCTCAGTGA

Upstream 100 bases:

>100_bases
GAGTTAGCGCCCTTGTCGCGTCAGCTGAATCAAAAGCCTAACGCACTTATTTTAGGGGCAGATCTGCCCGCAGACCCCAT
CCCAGTTAAAGGTAACTAAT

Downstream 100 bases:

>100_bases
CTGCCAGCTCAGTGACTGCCAGCTCAGTCACTGCCTGCTGAGTTAGCCTCAGCTCAATAGGCAAAATCACTGCTAAAGGC
GACATTAAGCTGAGCTTTTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MRILLLLIAFLMAGCSSQPTPQTYFIALQHTAVAGTTDTSRGVIRSGEPCALRVNRVNLADYLNTHGLVYQTSARELVVA
KQHLWAGSLAEQIQFRLNNLLSQSCSASARWALATDSPAKSVQLDLIVTEFYGSYTGEAVVGGQWRLMDNTQQVLREQPF
QYRVSLPEEGYAALVSSLDNGLVQLAEGIRLMASPHTAQ

Sequences:

>Translated_199_residues
MRILLLLIAFLMAGCSSQPTPQTYFIALQHTAVAGTTDTSRGVIRSGEPCALRVNRVNLADYLNTHGLVYQTSARELVVA
KQHLWAGSLAEQIQFRLNNLLSQSCSASARWALATDSPAKSVQLDLIVTEFYGSYTGEAVVGGQWRLMDNTQQVLREQPF
QYRVSLPEEGYAALVSSLDNGLVQLAEGIRLMASPHTAQ
>Mature_199_residues
MRILLLLIAFLMAGCSSQPTPQTYFIALQHTAVAGTTDTSRGVIRSGEPCALRVNRVNLADYLNTHGLVYQTSARELVVA
KQHLWAGSLAEQIQFRLNNLLSQSCSASARWALATDSPAKSVQLDLIVTEFYGSYTGEAVVGGQWRLMDNTQQVLREQPF
QYRVSLPEEGYAALVSSLDNGLVQLAEGIRLMASPHTAQ

Specific function: Unknown

COG id: COG3009

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI145693109, Length=180, Percent_Identity=33.8888888888889, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005586 [H]

Pfam domain/function: PF03886 DUF330 [H]

EC number: NA

Molecular weight: Translated: 21784; Mature: 21784

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILLLLIAFLMAGCSSQPTPQTYFIALQHTAVAGTTDTSRGVIRSGEPCALRVNRVNLA
CHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCEECCCCEEEEEEEECHH
DYLNTHGLVYQTSARELVVAKQHLWAGSLAEQIQFRLNNLLSQSCSASARWALATDSPAK
HHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC
SVQLDLIVTEFYGSYTGEAVVGGQWRLMDNTQQVLREQPFQYRVSLPEEGYAALVSSLDN
CEEEEEEEEECCCCCCCCEEECCEEEECCHHHHHHHCCCCEEEECCCCCHHHHHHHHHHH
GLVQLAEGIRLMASPHTAQ
HHHHHHHCCEEECCCCCCC
>Mature Secondary Structure
MRILLLLIAFLMAGCSSQPTPQTYFIALQHTAVAGTTDTSRGVIRSGEPCALRVNRVNLA
CHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCEECCCCEEEEEEEECHH
DYLNTHGLVYQTSARELVVAKQHLWAGSLAEQIQFRLNNLLSQSCSASARWALATDSPAK
HHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC
SVQLDLIVTEFYGSYTGEAVVGGQWRLMDNTQQVLREQPFQYRVSLPEEGYAALVSSLDN
CEEEEEEEEECCCCCCCCEEECCEEEECCHHHHHHHCCCCEEEECCCCCHHHHHHHHHHH
GLVQLAEGIRLMASPHTAQ
HHHHHHHCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]