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The map label for this gene is yafC [H]

Identifier: 117920360

GI number: 117920360

Start: 2274133

End: 2275044

Strand: Direct

Name: yafC [H]

Synonym: Shewana3_1915

Alternate gene names: 117920360

Gene position: 2274133-2275044 (Clockwise)

Preceding gene: 117920349

Following gene: 117920361

Centisome position: 45.74

GC content: 42.87

Gene sequence:

>912_bases
GTGAATGTGAGAATTAATGATCTTAGGCTGTTTTTGTTGGTTGTAGAGTTAGGCAGTTTTGCTGCCGCGGCCAGTTCGAT
TGGGATCCCGCGGGCTTCGGTCAGTCGCCGTATCGGTGAGTTAGAGGCGGATCTGGGGACTAAACTGTTTACCCGCACGA
CACGCCAATTGTCGCTGACACCCACAGGCGAAAACTACCACCAGCAGTTGATGGAGATTATTCCAAGGCTCGAATCCCTC
AATGAGTCGGTCAAAAATCAACGTAATATGCCAACGGGATCGGTCAAGCTAGGTTTAGTTGGCGATGCCGATGTTGTGAC
CCATCATTTATTGCAGGACTTTTTAAAAAATTACCCTCTTATTACCTTAGAAACCCATGTAAGTAATCTCGGTTATCACG
ATATTTTAAATTATGGTTTGGATGCTTGTATTCATATTGGGAATATCAAAGATAATTCTTTTGTCGCTCGACCGTTAATG
CGCGTATGTCGCAAATTATATGCAAGTCCTGATTATATTGCGGCCCATGGCATGCCAACATCACTGGATGATCTTAGTCA
ACATGCATTAATGATCTATCGTTTACAAAATGGTGAATTAGAAGATCGTTGGAAATTTAATTTAGGTGAGTATCGAGTAA
AAAGTCGACTGGTTTCTAACAGTAGCCAATATATTCGTCATGCCATTTTAAGTGGTGCTGGGATCAGTTTATTATCCGAA
TTAAGTGTGGTTGAACACTTGCAATTGGGTAATTTGGTTGAAGTTTTACCCGAATACGAGGTTTACGTTGACGATGCCTG
GTTAGTCTATCCTAGCCGCAAAGGCATGACCTATGCGGCTCGGCTGCTGATCGATAGCTTAATTCATGAGGCGAGTAAGA
CACCGGATGTCACATTGTCACAAAATTCGTGA

Upstream 100 bases:

>100_bases
AATTTGCTATCCTGTATAGTGAGCAGCATTGCGGCGATAAGATTCGAGGCTAGCGGATCGTCACGAGAGCGCTGCGCTGA
TGGCGGGCAAATAGAACGAG

Downstream 100 bases:

>100_bases
CATTGATGTACCTTTTTTGATTATTGTCCAATAAATTCACCTCCTTTACTCTGTGCCGCCTTAGTCCTAGTTACAGGAAA
TTGTGGTGAACAGAGTAAAA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MNVRINDLRLFLLVVELGSFAAAASSIGIPRASVSRRIGELEADLGTKLFTRTTRQLSLTPTGENYHQQLMEIIPRLESL
NESVKNQRNMPTGSVKLGLVGDADVVTHHLLQDFLKNYPLITLETHVSNLGYHDILNYGLDACIHIGNIKDNSFVARPLM
RVCRKLYASPDYIAAHGMPTSLDDLSQHALMIYRLQNGELEDRWKFNLGEYRVKSRLVSNSSQYIRHAILSGAGISLLSE
LSVVEHLQLGNLVEVLPEYEVYVDDAWLVYPSRKGMTYAARLLIDSLIHEASKTPDVTLSQNS

Sequences:

>Translated_303_residues
MNVRINDLRLFLLVVELGSFAAAASSIGIPRASVSRRIGELEADLGTKLFTRTTRQLSLTPTGENYHQQLMEIIPRLESL
NESVKNQRNMPTGSVKLGLVGDADVVTHHLLQDFLKNYPLITLETHVSNLGYHDILNYGLDACIHIGNIKDNSFVARPLM
RVCRKLYASPDYIAAHGMPTSLDDLSQHALMIYRLQNGELEDRWKFNLGEYRVKSRLVSNSSQYIRHAILSGAGISLLSE
LSVVEHLQLGNLVEVLPEYEVYVDDAWLVYPSRKGMTYAARLLIDSLIHEASKTPDVTLSQNS
>Mature_303_residues
MNVRINDLRLFLLVVELGSFAAAASSIGIPRASVSRRIGELEADLGTKLFTRTTRQLSLTPTGENYHQQLMEIIPRLESL
NESVKNQRNMPTGSVKLGLVGDADVVTHHLLQDFLKNYPLITLETHVSNLGYHDILNYGLDACIHIGNIKDNSFVARPLM
RVCRKLYASPDYIAAHGMPTSLDDLSQHALMIYRLQNGELEDRWKFNLGEYRVKSRLVSNSSQYIRHAILSGAGISLLSE
LSVVEHLQLGNLVEVLPEYEVYVDDAWLVYPSRKGMTYAARLLIDSLIHEASKTPDVTLSQNS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=302, Percent_Identity=33.112582781457, Blast_Score=151, Evalue=6e-38,
Organism=Escherichia coli, GI145693193, Length=289, Percent_Identity=33.2179930795848, Blast_Score=138, Evalue=3e-34,
Organism=Escherichia coli, GI87081978, Length=287, Percent_Identity=32.7526132404181, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1789440, Length=271, Percent_Identity=29.8892988929889, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI1789639, Length=287, Percent_Identity=26.8292682926829, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1787128, Length=306, Percent_Identity=27.7777777777778, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1787589, Length=294, Percent_Identity=26.530612244898, Blast_Score=104, Evalue=9e-24,
Organism=Escherichia coli, GI1790011, Length=303, Percent_Identity=25.0825082508251, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1788481, Length=295, Percent_Identity=22.0338983050847, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI157672245, Length=153, Percent_Identity=29.4117647058824, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33943; Mature: 33943

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVRINDLRLFLLVVELGSFAAAASSIGIPRASVSRRIGELEADLGTKLFTRTTRQLSLT
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
PTGENYHQQLMEIIPRLESLNESVKNQRNMPTGSVKLGLVGDADVVTHHLLQDFLKNYPL
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCE
ITLETHVSNLGYHDILNYGLDACIHIGNIKDNSFVARPLMRVCRKLYASPDYIAAHGMPT
EEEEHHHHHCCHHHHHHHCHHHEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCC
SLDDLSQHALMIYRLQNGELEDRWKFNLGEYRVKSRLVSNSSQYIRHAILSGAGISLLSE
CHHHHHHHEEEEEEECCCCCCCHHCCCHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHH
LSVVEHLQLGNLVEVLPEYEVYVDDAWLVYPSRKGMTYAARLLIDSLIHEASKTPDVTLS
HHHHHHHHHCCHHHHCCCCEEEECCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEC
QNS
CCC
>Mature Secondary Structure
MNVRINDLRLFLLVVELGSFAAAASSIGIPRASVSRRIGELEADLGTKLFTRTTRQLSLT
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
PTGENYHQQLMEIIPRLESLNESVKNQRNMPTGSVKLGLVGDADVVTHHLLQDFLKNYPL
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCE
ITLETHVSNLGYHDILNYGLDACIHIGNIKDNSFVARPLMRVCRKLYASPDYIAAHGMPT
EEEEHHHHHCCHHHHHHHCHHHEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCC
SLDDLSQHALMIYRLQNGELEDRWKFNLGEYRVKSRLVSNSSQYIRHAILSGAGISLLSE
CHHHHHHHEEEEEEECCCCCCCHHCCCHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHH
LSVVEHLQLGNLVEVLPEYEVYVDDAWLVYPSRKGMTYAARLLIDSLIHEASKTPDVTLS
HHHHHHHHHCCHHHHCCCCEEEECCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEC
QNS
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]