Click here to switch to the map view.

The map label for this gene is 117920356

Identifier: 117920356

GI number: 117920356

Start: 2267918

End: 2268706

Strand: Reverse

Name: 117920356

Synonym: Shewana3_1911

Alternate gene names: NA

Gene position: 2268706-2267918 (Counterclockwise)

Preceding gene: 117920357

Following gene: 117920355

Centisome position: 45.63

GC content: 53.87

Gene sequence:

>789_bases
GTGTTAAACGCCACGCCACGCTTAACCAACACCGCCCAGCTTTATGGGATAGAGAGTGGGGTCACAAGCGGTTTAGACAC
GGGCTTACATACCGACTTATCCGCTGCTGTAACACCAGAGTCAGCGGATAAGCTGAAGCTGGTCGAACTGCTCAGTCCCT
ATCACCCGAGCGAAACACGCTTCATGCTGGAGGCTCAAACCGCTCTCGCCTTTAAGGCGATGGCGGACAGCGCCGCCACA
GATGGGATAGCCCTCGCGATTTGCTCGGCCTATCGGCCTTTCGACAGGCAACTCGCCATTTGGAACGCCAAGGCCAGCGG
TAAGCGCGTTGTGCTGGATATCAACGAGCAGCCAGTGGATATCAGTCCACTGAGCGATGATGCATTAGTCGATTTAATTT
TACTCTGGTCGGCATTGCCCGGCGCGTCACGCCATCACTGGGGCACGGATATCGATGTGTTTGATGCCAAGCAAATCGAG
GTAAAATCCCTGCGGTTAGTCGAAGCCGAATACACTGATGGCGGCCCCTGCGCCCACTTACACCAGTGGCTACTCCAGCA
CGCCAAGGATTTTGGGTTTTATTTTCCTTTTCAGCGCGGTAAAAGCGCCGTCAGCGCCGAGCCTTGGCATATCAGCTATT
TTCCCGTGTCTCAAACCCTGTTACCCCAATTTGAGGTGCAGGCCTTAGCGCAGGTTATCCAGCAGAGTGATATGTTGCTT
AAAGAAGCGGTGCTCGCTCGCTTACCTGTGCTTGTGGCGGAATATGTACATCGAATTGCAAAGCCTTAA

Upstream 100 bases:

>100_bases
GTCCAGTGAACGCCACTATCCATAAAGTGAACGAGTGCGTGAAAATCGACGATCTCGAGCAGTTAGCCCTGTGCTACGAA
GTGATTTTGGAACAGTTACT

Downstream 100 bases:

>100_bases
GGTGTCGCAATTCGCACAACTTGATGGTGCCTTTTACTCGGCGCTTATCTTAAAAAGTAGGTTTTATGGATTTTTCTTCA
CACAGAAAACAACTCAACAT

Product: peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MLNATPRLTNTAQLYGIESGVTSGLDTGLHTDLSAAVTPESADKLKLVELLSPYHPSETRFMLEAQTALAFKAMADSAAT
DGIALAICSAYRPFDRQLAIWNAKASGKRVVLDINEQPVDISPLSDDALVDLILLWSALPGASRHHWGTDIDVFDAKQIE
VKSLRLVEAEYTDGGPCAHLHQWLLQHAKDFGFYFPFQRGKSAVSAEPWHISYFPVSQTLLPQFEVQALAQVIQQSDMLL
KEAVLARLPVLVAEYVHRIAKP

Sequences:

>Translated_262_residues
MLNATPRLTNTAQLYGIESGVTSGLDTGLHTDLSAAVTPESADKLKLVELLSPYHPSETRFMLEAQTALAFKAMADSAAT
DGIALAICSAYRPFDRQLAIWNAKASGKRVVLDINEQPVDISPLSDDALVDLILLWSALPGASRHHWGTDIDVFDAKQIE
VKSLRLVEAEYTDGGPCAHLHQWLLQHAKDFGFYFPFQRGKSAVSAEPWHISYFPVSQTLLPQFEVQALAQVIQQSDMLL
KEAVLARLPVLVAEYVHRIAKP
>Mature_262_residues
MLNATPRLTNTAQLYGIESGVTSGLDTGLHTDLSAAVTPESADKLKLVELLSPYHPSETRFMLEAQTALAFKAMADSAAT
DGIALAICSAYRPFDRQLAIWNAKASGKRVVLDINEQPVDISPLSDDALVDLILLWSALPGASRHHWGTDIDVFDAKQIE
VKSLRLVEAEYTDGGPCAHLHQWLLQHAKDFGFYFPFQRGKSAVSAEPWHISYFPVSQTLLPQFEVQALAQVIQQSDMLL
KEAVLARLPVLVAEYVHRIAKP

Specific function: Unknown

COG id: COG1876

COG function: function code M; D-alanyl-D-alanine carboxypeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003709 [H]

Pfam domain/function: PF02557 VanY [H]

EC number: NA

Molecular weight: Translated: 28831; Mature: 28831

Theoretical pI: Translated: 5.53; Mature: 5.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNATPRLTNTAQLYGIESGVTSGLDTGLHTDLSAAVTPESADKLKLVELLSPYHPSETR
CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCE
FMLEAQTALAFKAMADSAATDGIALAICSAYRPFDRQLAIWNAKASGKRVVLDINEQPVD
EEEEHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCEEEEECCCCCCC
ISPLSDDALVDLILLWSALPGASRHHWGTDIDVFDAKQIEVKSLRLVEAEYTDGGPCAHL
CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCEEEEHEEEEEEECCCCCCHHHH
HQWLLQHAKDFGFYFPFQRGKSAVSAEPWHISYFPVSQTLLPQFEVQALAQVIQQSDMLL
HHHHHHHHHHCCEECCHHHCCCCCCCCCEEEEEECCCHHHCCHHHHHHHHHHHHHHHHHH
KEAVLARLPVLVAEYVHRIAKP
HHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLNATPRLTNTAQLYGIESGVTSGLDTGLHTDLSAAVTPESADKLKLVELLSPYHPSETR
CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCE
FMLEAQTALAFKAMADSAATDGIALAICSAYRPFDRQLAIWNAKASGKRVVLDINEQPVD
EEEEHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCEEEEECCCCCCC
ISPLSDDALVDLILLWSALPGASRHHWGTDIDVFDAKQIEVKSLRLVEAEYTDGGPCAHL
CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCEEEEHEEEEEEECCCCCCHHHH
HQWLLQHAKDFGFYFPFQRGKSAVSAEPWHISYFPVSQTLLPQFEVQALAQVIQQSDMLL
HHHHHHHHHHCCEECCHHHCCCCCCCCCEEEEEECCCHHHCCHHHHHHHHHHHHHHHHHH
KEAVLARLPVLVAEYVHRIAKP
HHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]