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The map label for this gene is apbE [H]

Identifier: 117920329

GI number: 117920329

Start: 2231229

End: 2232131

Strand: Direct

Name: apbE [H]

Synonym: Shewana3_1884

Alternate gene names: 117920329

Gene position: 2231229-2232131 (Clockwise)

Preceding gene: 117920328

Following gene: 117920330

Centisome position: 44.87

GC content: 52.49

Gene sequence:

>903_bases
ATGCCAGCAGTTTCCCCTAATGCGCCTTATCGACTCGTGCGCCGTGATTGGGGATTTTTGGGCGAGTTTAGGGCCATGGC
GAGTCCCTGTGAGCTATTGATTGCCAGTCATGATGAAGATATCGCCTACGATATGCTCGATATGGCGGCCCGTGGGGCGC
GAAGAATCGAGCAAAAGTACAGTCGTTTTATTGAAGGCAATTATCTATGGCGTTTGAATCATGCCGATGGCAAACGGCAG
TCAATCGATGAAGAAACCTGGCAACTGTTGGCTTTTGCGAAACAATGCTTTGAGTTAAGTGATGGGCTATTTGATATTTC
GGCCTGCCCGTTAATGCAAGTGTGGCGTTTTACGCAGGACGCCAAGATGCCCGCCAAAGCGGATATTGAGGCTGCGCGAG
CCTTAGTGGGATTTGCGCGTATTGAGTTTAATTCCCAAGAGTTGCTGATGCCCCAAGGCATGCAGCTCGATGTTGGCGGT
ATCGCCAAGGAATATGCGGTCGATAGGGTCGCCTATGAGCTTGCCGAGTCCTATGCGGGGATCTCGGTATTGGTTAATTT
TGGTGGTGATATCGCCTGTCCGGTGGCCAATGCTGTGCCTTGGCAGGTAGGGATTGAAGATCCACATCAGCTTGACCATG
CCGCCAAAGTGCTTGCCATCACCCAAGGCGCCTTAGCAACCAGCGGTGATACACGGCGATTTATTGAAGTTGATGGCAAG
CGTTATGGGCATATTGTCGATCCGCGCACTGGCTATCCGGTAAGTGGGGCGCCGCGCTCGGTGACAGTTCTTGGGCCAAA
CTGCGTCACCGCAGGCATGTTGGCCACCATGGCCATGTTACAGGGTGAGCAGGCCGAAGCCTTTTTAGCCGAGCAATCGG
TGCAATCTAGTATTTTTCGATAG

Upstream 100 bases:

>100_bases
TAAAGGTATACTCTGTTACTGAGCCGTAAACAAAGTGCATCAATATGGGACATGTTGCCCATATTGAGCGTTACGCGAAG
TACAGAATAAGGATACGAAG

Downstream 100 bases:

>100_bases
GGCATTATCAATGCGTATCATGTTAGTGGAAGACAACGAGTTATTAGCCCAAGGGATCTGCTTGAGCCTTGCCAAAATGG
GGATGCAGGTCGATCACCTA

Product: ApbE family lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MPAVSPNAPYRLVRRDWGFLGEFRAMASPCELLIASHDEDIAYDMLDMAARGARRIEQKYSRFIEGNYLWRLNHADGKRQ
SIDEETWQLLAFAKQCFELSDGLFDISACPLMQVWRFTQDAKMPAKADIEAARALVGFARIEFNSQELLMPQGMQLDVGG
IAKEYAVDRVAYELAESYAGISVLVNFGGDIACPVANAVPWQVGIEDPHQLDHAAKVLAITQGALATSGDTRRFIEVDGK
RYGHIVDPRTGYPVSGAPRSVTVLGPNCVTAGMLATMAMLQGEQAEAFLAEQSVQSSIFR

Sequences:

>Translated_300_residues
MPAVSPNAPYRLVRRDWGFLGEFRAMASPCELLIASHDEDIAYDMLDMAARGARRIEQKYSRFIEGNYLWRLNHADGKRQ
SIDEETWQLLAFAKQCFELSDGLFDISACPLMQVWRFTQDAKMPAKADIEAARALVGFARIEFNSQELLMPQGMQLDVGG
IAKEYAVDRVAYELAESYAGISVLVNFGGDIACPVANAVPWQVGIEDPHQLDHAAKVLAITQGALATSGDTRRFIEVDGK
RYGHIVDPRTGYPVSGAPRSVTVLGPNCVTAGMLATMAMLQGEQAEAFLAEQSVQSSIFR
>Mature_299_residues
PAVSPNAPYRLVRRDWGFLGEFRAMASPCELLIASHDEDIAYDMLDMAARGARRIEQKYSRFIEGNYLWRLNHADGKRQS
IDEETWQLLAFAKQCFELSDGLFDISACPLMQVWRFTQDAKMPAKADIEAARALVGFARIEFNSQELLMPQGMQLDVGGI
AKEYAVDRVAYELAESYAGISVLVNFGGDIACPVANAVPWQVGIEDPHQLDHAAKVLAITQGALATSGDTRRFIEVDGKR
YGHIVDPRTGYPVSGAPRSVTVLGPNCVTAGMLATMAMLQGEQAEAFLAEQSVQSSIFR

Specific function: Involved in the conversion of aminoimidazole ribotide (AIR), a purine intermediate, to the 4-amino-5-hydroxymethyl-2- methyl pyrimidine (HMP) moiety of thiamine [H]

COG id: COG1477

COG function: function code H; Membrane-associated lipoprotein involved in thiamine biosynthesis

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ApbE family [H]

Homologues:

Organism=Escherichia coli, GI1788543, Length=195, Percent_Identity=31.7948717948718, Blast_Score=92, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003374 [H]

Pfam domain/function: PF02424 ApbE [H]

EC number: NA

Molecular weight: Translated: 33054; Mature: 32923

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAVSPNAPYRLVRRDWGFLGEFRAMASPCELLIASHDEDIAYDMLDMAARGARRIEQKY
CCCCCCCCCHHHHHHHHCHHHHHHHHCCCHHEEEECCCCHHHHHHHHHHHHHHHHHHHHH
SRFIEGNYLWRLNHADGKRQSIDEETWQLLAFAKQCFELSDGLFDISACPLMQVWRFTQD
HHHHCCCEEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHC
AKMPAKADIEAARALVGFARIEFNSQELLMPQGMQLDVGGIAKEYAVDRVAYELAESYAG
CCCCCHHHHHHHHHHHHHHHEEECCCCEECCCCCEECCCHHHHHHHHHHHHHHHHHHHCC
ISVLVNFGGDIACPVANAVPWQVGIEDPHQLDHAAKVLAITQGALATSGDTRRFIEVDGK
EEEEEECCCCEECCCCCCCCCEECCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCC
RYGHIVDPRTGYPVSGAPRSVTVLGPNCVTAGMLATMAMLQGEQAEAFLAEQSVQSSIFR
CCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PAVSPNAPYRLVRRDWGFLGEFRAMASPCELLIASHDEDIAYDMLDMAARGARRIEQKY
CCCCCCCCHHHHHHHHCHHHHHHHHCCCHHEEEECCCCHHHHHHHHHHHHHHHHHHHHH
SRFIEGNYLWRLNHADGKRQSIDEETWQLLAFAKQCFELSDGLFDISACPLMQVWRFTQD
HHHHCCCEEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHC
AKMPAKADIEAARALVGFARIEFNSQELLMPQGMQLDVGGIAKEYAVDRVAYELAESYAG
CCCCCHHHHHHHHHHHHHHHEEECCCCEECCCCCEECCCHHHHHHHHHHHHHHHHHHHCC
ISVLVNFGGDIACPVANAVPWQVGIEDPHQLDHAAKVLAITQGALATSGDTRRFIEVDGK
EEEEEECCCCEECCCCCCCCCEECCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCC
RYGHIVDPRTGYPVSGAPRSVTVLGPNCVTAGMLATMAMLQGEQAEAFLAEQSVQSSIFR
CCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]