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The map label for this gene is qseB [H]

Identifier: 117920330

GI number: 117920330

Start: 2232142

End: 2232801

Strand: Direct

Name: qseB [H]

Synonym: Shewana3_1885

Alternate gene names: 117920330

Gene position: 2232142-2232801 (Clockwise)

Preceding gene: 117920329

Following gene: 117920331

Centisome position: 44.89

GC content: 48.94

Gene sequence:

>660_bases
ATGCGTATCATGTTAGTGGAAGACAACGAGTTATTAGCCCAAGGGATCTGCTTGAGCCTTGCCAAAATGGGGATGCAGGT
CGATCACCTAAGTAGTTATCAGCAAGCATTAGTGGGCATTAAGAATGAAACCTTTAGCGCCATAGTGCTCGATTTAGGCT
TACCCGACGGCAATGGTAAGGAGCTACTTAAAGCGTGGCGGGCAGAGGGCGTGTCGATTCCGACCATTGTGCTCACGGCC
AACACGGATTTTGATACCAAACTTGAGTGCCTCGATATCGGCGCCGACGATTATTTAGGTAAACCCTTCGATGTGCGTGA
GTTAGCCGCGCGCATTCGGGCGATCGTCCGCCGGCAATATGGTCTGGATAATAACAGCTTGAATATCGGTGCATTAAGTA
TTGACCTCAACACCCGTGAGGTGAGTTTTCGCGATCAAAATGTGCCGCTATCACGTCGGGAGTTTCAGCTACTACTCGAA
CTGGCGCAATCCGCTGGCCGAGTGTTAACTCGTAATCAGCTAGAGCAGTTAACCTATGGCTGGGATGAGGTTGGCAGCAA
CTCGATTGAGGTCCATATCCACCATTTACGTAAAAAGTTAGCCAATGACTTGATTAAGACCGTACGCGGCATTGGCTATA
CCCTAACCGAAGTCAATTAA

Upstream 100 bases:

>100_bases
GGCATGTTGGCCACCATGGCCATGTTACAGGGTGAGCAGGCCGAAGCCTTTTTAGCCGAGCAATCGGTGCAATCTAGTAT
TTTTCGATAGGGCATTATCA

Downstream 100 bases:

>100_bases
CCTGAAAATTAACGCGAGAGTCAGGATTTAAGTGACAAACTCGGCGTTTATCGGTATTTAGTAACAGCCTTTTAGGCATG
TTTACTCTCACCATAAACGA

Product: two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MRIMLVEDNELLAQGICLSLAKMGMQVDHLSSYQQALVGIKNETFSAIVLDLGLPDGNGKELLKAWRAEGVSIPTIVLTA
NTDFDTKLECLDIGADDYLGKPFDVRELAARIRAIVRRQYGLDNNSLNIGALSIDLNTREVSFRDQNVPLSRREFQLLLE
LAQSAGRVLTRNQLEQLTYGWDEVGSNSIEVHIHHLRKKLANDLIKTVRGIGYTLTEVN

Sequences:

>Translated_219_residues
MRIMLVEDNELLAQGICLSLAKMGMQVDHLSSYQQALVGIKNETFSAIVLDLGLPDGNGKELLKAWRAEGVSIPTIVLTA
NTDFDTKLECLDIGADDYLGKPFDVRELAARIRAIVRRQYGLDNNSLNIGALSIDLNTREVSFRDQNVPLSRREFQLLLE
LAQSAGRVLTRNQLEQLTYGWDEVGSNSIEVHIHHLRKKLANDLIKTVRGIGYTLTEVN
>Mature_219_residues
MRIMLVEDNELLAQGICLSLAKMGMQVDHLSSYQQALVGIKNETFSAIVLDLGLPDGNGKELLKAWRAEGVSIPTIVLTA
NTDFDTKLECLDIGADDYLGKPFDVRELAARIRAIVRRQYGLDNNSLNIGALSIDLNTREVSFRDQNVPLSRREFQLLLE
LAQSAGRVLTRNQLEQLTYGWDEVGSNSIEVHIHHLRKKLANDLIKTVRGIGYTLTEVN

Specific function: Member of a two-component regulatory system qseB/qseC. Activates the flagella regulon by activating transcription of flhDC. Currently it is not known whether this effect is direct or not [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=218, Percent_Identity=43.5779816513761, Blast_Score=186, Evalue=1e-48,
Organism=Escherichia coli, GI1790552, Length=216, Percent_Identity=39.3518518518519, Blast_Score=155, Evalue=2e-39,
Organism=Escherichia coli, GI1787375, Length=218, Percent_Identity=35.3211009174312, Blast_Score=140, Evalue=8e-35,
Organism=Escherichia coli, GI87082012, Length=224, Percent_Identity=34.375, Blast_Score=127, Evalue=7e-31,
Organism=Escherichia coli, GI1786911, Length=219, Percent_Identity=34.703196347032, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1786784, Length=227, Percent_Identity=33.0396475770925, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1790860, Length=223, Percent_Identity=33.6322869955157, Blast_Score=114, Evalue=4e-27,
Organism=Escherichia coli, GI1789809, Length=228, Percent_Identity=32.4561403508772, Blast_Score=112, Evalue=1e-26,
Organism=Escherichia coli, GI1786599, Length=223, Percent_Identity=31.390134529148, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI2367329, Length=180, Percent_Identity=39.4444444444444, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1788394, Length=223, Percent_Identity=33.1838565022422, Blast_Score=97, Evalue=7e-22,
Organism=Escherichia coli, GI1787229, Length=222, Percent_Identity=26.5765765765766, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI145693140, Length=230, Percent_Identity=32.6086956521739, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1790863, Length=181, Percent_Identity=28.1767955801105, Blast_Score=72, Evalue=3e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 24460; Mature: 24460

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIMLVEDNELLAQGICLSLAKMGMQVDHLSSYQQALVGIKNETFSAIVLDLGLPDGNGK
CEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHH
ELLKAWRAEGVSIPTIVLTANTDFDTKLECLDIGADDYLGKPFDVRELAARIRAIVRRQY
HHHHHHHHCCCCCCEEEEEECCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHHHHHH
GLDNNSLNIGALSIDLNTREVSFRDQNVPLSRREFQLLLELAQSAGRVLTRNQLEQLTYG
CCCCCCEEEEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHCC
WDEVGSNSIEVHIHHLRKKLANDLIKTVRGIGYTLTEVN
HHHHCCCEEEEHHHHHHHHHHHHHHHHHHHCCEEEEECC
>Mature Secondary Structure
MRIMLVEDNELLAQGICLSLAKMGMQVDHLSSYQQALVGIKNETFSAIVLDLGLPDGNGK
CEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHH
ELLKAWRAEGVSIPTIVLTANTDFDTKLECLDIGADDYLGKPFDVRELAARIRAIVRRQY
HHHHHHHHCCCCCCEEEEEECCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHHHHHH
GLDNNSLNIGALSIDLNTREVSFRDQNVPLSRREFQLLLELAQSAGRVLTRNQLEQLTYG
CCCCCCEEEEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHCC
WDEVGSNSIEVHIHHLRKKLANDLIKTVRGIGYTLTEVN
HHHHCCCEEEEHHHHHHHHHHHHHHHHHHHCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796; 11929534 [H]