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The map label for this gene is yoeC [H]

Identifier: 117920246

GI number: 117920246

Start: 2127115

End: 2127729

Strand: Reverse

Name: yoeC [H]

Synonym: Shewana3_1799

Alternate gene names: 117920246

Gene position: 2127729-2127115 (Counterclockwise)

Preceding gene: 117920247

Following gene: 117920245

Centisome position: 42.79

GC content: 53.82

Gene sequence:

>615_bases
ATGGGCTGGTGCCCACATTCATCACATAGCCAATTGAGGGAACCAAGCATGAACGAAGTCGAGGCGGTCAAGAACCGCGA
CACCATCAAGCTTATCAGTTACCTGCTCGAACGTCACTTTGGTCAGCAGATGGCCAATGTCTGGAATATCGGTCTTAACC
TGGCCCTTAGGATCTCGGACTTACTGGCGATCAAGTTCAGCGATATCGACGGCGATCGCTTAAATATCATTGAGCAGAAG
ACCGGTAAACGGGCCAGCATCAAGCTCAATCCTAAGACACTGGCGTTGATTGAGGCGATCCACCAGCGTCACCCCGAGCA
TATCTACCTGTTCCAATCCCACCGCTCGAGCCAAGCCAAAGACCGACAGGCCCCCGCGAAACCACTGACACGGCGCGCCG
TCGCCAAAGCGTTTGCCTTTGTCGGTGACGATATCAAGTTAGCCCTGGGCACCCACTCGATGCGTAAAACCCGCGGCTAT
CACCTGTACCAAGCCTGCAAAGACATTGGCCGGGTGATGCGTATGCTGCGGCATCAGTCAGAAGCGGTCACCCTGCGTTA
TATCGGCATTACTCAGCAGCAAATCGATAAGGACTTTGTCGAGCTGGAAATCTGA

Upstream 100 bases:

>100_bases
CGAGATGGAGGTGTACCAGGTTCAGATCAGCGCCGACTGAACTTGGTGCCCACAAAGGTATTTTGGGCACCAAGCAACGC
AGGCCCCATGCGGGTTGGCG

Downstream 100 bases:

>100_bases
ATCAATCAGCACGCCCATTTCATCCTATTCAACCCATTAGCAGATGCAACCTAGGAGTATCTGCGTTGCTTTCTTGGAGT
ACATACCATGTATAGATTTC

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 203

Protein sequence:

>204_residues
MGWCPHSSHSQLREPSMNEVEAVKNRDTIKLISYLLERHFGQQMANVWNIGLNLALRISDLLAIKFSDIDGDRLNIIEQK
TGKRASIKLNPKTLALIEAIHQRHPEHIYLFQSHRSSQAKDRQAPAKPLTRRAVAKAFAFVGDDIKLALGTHSMRKTRGY
HLYQACKDIGRVMRMLRHQSEAVTLRYIGITQQQIDKDFVELEI

Sequences:

>Translated_204_residues
MGWCPHSSHSQLREPSMNEVEAVKNRDTIKLISYLLERHFGQQMANVWNIGLNLALRISDLLAIKFSDIDGDRLNIIEQK
TGKRASIKLNPKTLALIEAIHQRHPEHIYLFQSHRSSQAKDRQAPAKPLTRRAVAKAFAFVGDDIKLALGTHSMRKTRGY
HLYQACKDIGRVMRMLRHQSEAVTLRYIGITQQQIDKDFVELEI
>Mature_203_residues
GWCPHSSHSQLREPSMNEVEAVKNRDTIKLISYLLERHFGQQMANVWNIGLNLALRISDLLAIKFSDIDGDRLNIIEQKT
GKRASIKLNPKTLALIEAIHQRHPEHIYLFQSHRSSQAKDRQAPAKPLTRRAVAKAFAFVGDDIKLALGTHSMRKTRGYH
LYQACKDIGRVMRMLRHQSEAVTLRYIGITQQQIDKDFVELEI

Specific function: Unknown

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 23434; Mature: 23303

Theoretical pI: Translated: 10.36; Mature: 10.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGWCPHSSHSQLREPSMNEVEAVKNRDTIKLISYLLERHFGQQMANVWNIGLNLALRISD
CCCCCCCCCHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEH
LLAIKFSDIDGDRLNIIEQKTGKRASIKLNPKTLALIEAIHQRHPEHIYLFQSHRSSQAK
EEEEEECCCCCCHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCEEEEEECCCCCCHH
DRQAPAKPLTRRAVAKAFAFVGDDIKLALGTHSMRKTRGYHLYQACKDIGRVMRMLRHQS
HHCCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCHHHHHHHHHHHHHHHHHHCCC
EAVTLRYIGITQQQIDKDFVELEI
CEEEEEEECCCHHHHCCHHHEECC
>Mature Secondary Structure 
GWCPHSSHSQLREPSMNEVEAVKNRDTIKLISYLLERHFGQQMANVWNIGLNLALRISD
CCCCCCCCHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEH
LLAIKFSDIDGDRLNIIEQKTGKRASIKLNPKTLALIEAIHQRHPEHIYLFQSHRSSQAK
EEEEEECCCCCCHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCEEEEEECCCCCCHH
DRQAPAKPLTRRAVAKAFAFVGDDIKLALGTHSMRKTRGYHLYQACKDIGRVMRMLRHQS
HHCCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCHHHHHHHHHHHHHHHHHHCCC
EAVTLRYIGITQQQIDKDFVELEI
CEEEEEEECCCHHHHCCHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]