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The map label for this gene is dcd [H]

Identifier: 117920210

GI number: 117920210

Start: 2077873

End: 2078454

Strand: Direct

Name: dcd [H]

Synonym: Shewana3_1763

Alternate gene names: 117920210

Gene position: 2077873-2078454 (Clockwise)

Preceding gene: 117920209

Following gene: 117920211

Centisome position: 41.79

GC content: 52.75

Gene sequence:

>582_bases
ATGCGCTTAACCGATATCGAAATTGAACAGGCCCTTGATAACGGCTCGATTGTGATTGAACCTCGCCCAAGCAACGATGC
GATTTCTGGTGTGAGTGTCGATGTGCGATTAGGGGGGCAATTTCGCGTCTTTAAAGACCATACCGCGCCTTTTATCGACC
TGAGTGGTCCGAGTACGGAAGTGCAGGCGGCGCTTGATCGGGTGATGAGCGAAATCATCGAAATCCCTGACGGCGAAGCC
TTCTTCTTGCATCCTGGTGAATTGGCGCTCGCCGTGACCTATGAGAGCGTGACGCTGCCCGCCGATATCGTCGGTTGGCT
CGATGGCCGCTCTTCATTGGCGCGTTTAGGCCTGATGGTGCACGTGACAGCGCACCGGATTGATCCGGGTTGGCAGGGTA
AAATCGTGCTTGAGTTTTATAACAGTGGTAAGTTGCCTTTAGCGCTGCGTCCACGGATGACCATTGGTGCGTTAAACTTT
GAACGTTTAAGTGGCCCAGTGGCGCGTCCTTACAACAAGCGTAAAAACGCGAAATATAAAGATCAGCAAGATGCGGTCGC
CAGCCGTATCAGTCAGGACTAA

Upstream 100 bases:

>100_bases
CTCGCGGCGGTAAAAACCGTATCGCGACCGATATTTTGAAGACTCGTATTCAACATCTACTGGCAAAATAACGACTAAAA
CTCAGGGAGTAAAAGGCAAG

Downstream 100 bases:

>100_bases
TACCCTTGATTTGGGTTAATGGGGTATCACAGGCAAGCATTGCTCCCATGGACAGAGGGCTTGCCTATGGTGATGGCCTA
TTTGCCACGATGCGAACCGA

Product: deoxycytidine triphosphate deaminase

Products: NA

Alternate protein names: dCTP deaminase [H]

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MRLTDIEIEQALDNGSIVIEPRPSNDAISGVSVDVRLGGQFRVFKDHTAPFIDLSGPSTEVQAALDRVMSEIIEIPDGEA
FFLHPGELALAVTYESVTLPADIVGWLDGRSSLARLGLMVHVTAHRIDPGWQGKIVLEFYNSGKLPLALRPRMTIGALNF
ERLSGPVARPYNKRKNAKYKDQQDAVASRISQD

Sequences:

>Translated_193_residues
MRLTDIEIEQALDNGSIVIEPRPSNDAISGVSVDVRLGGQFRVFKDHTAPFIDLSGPSTEVQAALDRVMSEIIEIPDGEA
FFLHPGELALAVTYESVTLPADIVGWLDGRSSLARLGLMVHVTAHRIDPGWQGKIVLEFYNSGKLPLALRPRMTIGALNF
ERLSGPVARPYNKRKNAKYKDQQDAVASRISQD
>Mature_193_residues
MRLTDIEIEQALDNGSIVIEPRPSNDAISGVSVDVRLGGQFRVFKDHTAPFIDLSGPSTEVQAALDRVMSEIIEIPDGEA
FFLHPGELALAVTYESVTLPADIVGWLDGRSSLARLGLMVHVTAHRIDPGWQGKIVLEFYNSGKLPLALRPRMTIGALNF
ERLSGPVARPYNKRKNAKYKDQQDAVASRISQD

Specific function: De novo synthesis of thymidylate. [C]

COG id: COG0717

COG function: function code F; Deoxycytidine deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dCTP deaminase family [H]

Homologues:

Organism=Escherichia coli, GI1788379, Length=193, Percent_Identity=73.5751295336787, Blast_Score=289, Evalue=6e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011962
- InterPro:   IPR010550 [H]

Pfam domain/function: PF06559 DCD [H]

EC number: =3.5.4.13 [H]

Molecular weight: Translated: 21221; Mature: 21221

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLTDIEIEQALDNGSIVIEPRPSNDAISGVSVDVRLGGQFRVFKDHTAPFIDLSGPSTE
CCCCCCHHHHHCCCCCEEEEECCCCCCCCCEEEEEEECCEEEEEECCCCCEEEECCCCHH
VQAALDRVMSEIIEIPDGEAFFLHPGELALAVTYESVTLPADIVGWLDGRSSLARLGLMV
HHHHHHHHHHHHHCCCCCCEEEEECCCEEEEEEECCEECCHHHHEECCCHHHHHHHCEEE
HVTAHRIDPGWQGKIVLEFYNSGKLPLALRPRMTIGALNFERLSGPVARPYNKRKNAKYK
EEEEEECCCCCCCEEEEEEECCCCCCEEECCCEEEECCCHHHHCCCCCCCCCCCCCCCCC
DQQDAVASRISQD
CHHHHHHHHHCCC
>Mature Secondary Structure
MRLTDIEIEQALDNGSIVIEPRPSNDAISGVSVDVRLGGQFRVFKDHTAPFIDLSGPSTE
CCCCCCHHHHHCCCCCEEEEECCCCCCCCCEEEEEEECCEEEEEECCCCCEEEECCCCHH
VQAALDRVMSEIIEIPDGEAFFLHPGELALAVTYESVTLPADIVGWLDGRSSLARLGLMV
HHHHHHHHHHHHHCCCCCCEEEEECCCEEEEEEECCEECCHHHHEECCCHHHHHHHCEEE
HVTAHRIDPGWQGKIVLEFYNSGKLPLALRPRMTIGALNFERLSGPVARPYNKRKNAKYK
EEEEEECCCCCCCEEEEEEECCCCCCEEECCCEEEECCCHHHHCCCCCCCCCCCCCCCCC
DQQDAVASRISQD
CHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA