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The map label for this gene is ycfD [H]

Identifier: 117920191

GI number: 117920191

Start: 2057531

End: 2058670

Strand: Reverse

Name: ycfD [H]

Synonym: Shewana3_1744

Alternate gene names: 117920191

Gene position: 2058670-2057531 (Counterclockwise)

Preceding gene: 117920192

Following gene: 117920189

Centisome position: 41.4

GC content: 49.82

Gene sequence:

>1140_bases
ATGTATACACTCAATCTCGATATCGCCCAATTCCTCAAGGAACACTGGCAACAAAAACCTGTAGTCATCAAGGGGGCTTT
CCCTGACTTTGAAGATCCGATCAGCGCCGATGAGCTTGCAGGCCTTGCCTGTGAAGAAGAAATCACCTCGCGCATTGTGG
TCACTCAAAAAGACAACTGGGAAGTGATCCAAGGTCCGTTCGAGGATTACGACAATTACGGTGAAACCCACTGGCAATTA
CTGGTGCAAGCCGTAAACCACTGGTATCCGGACTCTCAGCCGTTAGTGGAAGCGTTTCGTTTTCTGCCCGACTGGCGATT
CGATGATTTGATGGTGTCCTTCGCGACCCCGAGTGGCGGTGTCGGTCCACACGTTGATAACTACGATGTGTTTATCATCC
AAGGTGAAGGCGAGCGTCGCTGGACTGTGGGAGCTAATACGCCGCAACAACGCCGTGGCGGCAACCCGAACTCGCCACTG
GTGGAAGACTTCGAGCCAATCATCGACGTGGTATTAGAAAAAGGCGACGTGCTATATATTCCGCCTGGCTACCCACACTG
CGGTGAAACCTTAACCTTAGCCTTAAGCTATTCAATTGGTTACCGTGCGCCGAGCCAACAGGAGCTCGCCAGTGAAGTTG
CCGATTACTTGCTCGACAATAACTTAGGTCAGCAGCGTTTTACCTCGGCGACTGAGCCTGCAAATCCTGGCGTGATCAGT
CAAGATCATCAGCTCGGGATCATGTCGCTCTTAAGTCAGCTCGCCCAAGATCCAACAAGCTACCAAGTGGTGCTAGGTAA
ACTGTTGAGTCAAAACCGTTTTGAACTGGATATTTGCGAGGGTGAAGAAGCCTATAACGCCGACGATCTGCAGGATGCCT
TCGAGCAAGGTGCCGGCGTTAATCGTATCGGTGGCTTAAAAGTGCTGCGCTTAGAAAACGACACTCAATCACGCTTATTC
ATCAATGGCGAAATTTATGAGCTGCCCAATACGCCAGAAGCCGTGTTAATCCAGTTAAGCGATCATGTCAGCTTTGATAG
CGACAGCGCCATGGCACTGTGTGAGCATGCTGAAGTGCAAGAACTACTGCTTAAGCTTATCAATCAAGGCTTATATTATT
TAAGTGACGATGAAGCTTAA

Upstream 100 bases:

>100_bases
ACAAAGTAGCAAGAGCAAACATTCGCGAGCTGATATTGTTTATCAGCCACAAATAAGGATTAAGGCGGTTACATTCGTTG
TAGTCGCCTTTTTTGACACT

Downstream 100 bases:

>100_bases
GCCTTAGCTCACTATTGCGTTAGGTCGACAGATTAGCGTCACCCAAAACAATAAAGGCACTCAACTGAGTGCCTTTAGTT
TTACGCTAACACTAAATTAA

Product: cupin 4 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MYTLNLDIAQFLKEHWQQKPVVIKGAFPDFEDPISADELAGLACEEEITSRIVVTQKDNWEVIQGPFEDYDNYGETHWQL
LVQAVNHWYPDSQPLVEAFRFLPDWRFDDLMVSFATPSGGVGPHVDNYDVFIIQGEGERRWTVGANTPQQRRGGNPNSPL
VEDFEPIIDVVLEKGDVLYIPPGYPHCGETLTLALSYSIGYRAPSQQELASEVADYLLDNNLGQQRFTSATEPANPGVIS
QDHQLGIMSLLSQLAQDPTSYQVVLGKLLSQNRFELDICEGEEAYNADDLQDAFEQGAGVNRIGGLKVLRLENDTQSRLF
INGEIYELPNTPEAVLIQLSDHVSFDSDSAMALCEHAEVQELLLKLINQGLYYLSDDEA

Sequences:

>Translated_379_residues
MYTLNLDIAQFLKEHWQQKPVVIKGAFPDFEDPISADELAGLACEEEITSRIVVTQKDNWEVIQGPFEDYDNYGETHWQL
LVQAVNHWYPDSQPLVEAFRFLPDWRFDDLMVSFATPSGGVGPHVDNYDVFIIQGEGERRWTVGANTPQQRRGGNPNSPL
VEDFEPIIDVVLEKGDVLYIPPGYPHCGETLTLALSYSIGYRAPSQQELASEVADYLLDNNLGQQRFTSATEPANPGVIS
QDHQLGIMSLLSQLAQDPTSYQVVLGKLLSQNRFELDICEGEEAYNADDLQDAFEQGAGVNRIGGLKVLRLENDTQSRLF
INGEIYELPNTPEAVLIQLSDHVSFDSDSAMALCEHAEVQELLLKLINQGLYYLSDDEA
>Mature_379_residues
MYTLNLDIAQFLKEHWQQKPVVIKGAFPDFEDPISADELAGLACEEEITSRIVVTQKDNWEVIQGPFEDYDNYGETHWQL
LVQAVNHWYPDSQPLVEAFRFLPDWRFDDLMVSFATPSGGVGPHVDNYDVFIIQGEGERRWTVGANTPQQRRGGNPNSPL
VEDFEPIIDVVLEKGDVLYIPPGYPHCGETLTLALSYSIGYRAPSQQELASEVADYLLDNNLGQQRFTSATEPANPGVIS
QDHQLGIMSLLSQLAQDPTSYQVVLGKLLSQNRFELDICEGEEAYNADDLQDAFEQGAGVNRIGGLKVLRLENDTQSRLF
INGEIYELPNTPEAVLIQLSDHVSFDSDSAMALCEHAEVQELLLKLINQGLYYLSDDEA

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=375, Percent_Identity=44, Blast_Score=321, Evalue=4e-89,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 42471; Mature: 42471

Theoretical pI: Translated: 3.95; Mature: 3.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYTLNLDIAQFLKEHWQQKPVVIKGAFPDFEDPISADELAGLACEEEITSRIVVTQKDNW
CEEECHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHCCHHHHHHHCEEEEEECCCC
EVIQGPFEDYDNYGETHWQLLVQAVNHWYPDSQPLVEAFRFLPDWRFDDLMVSFATPSGG
CEECCCHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCC
VGPHVDNYDVFIIQGEGERRWTVGANTPQQRRGGNPNSPLVEDFEPIIDVVLEKGDVLYI
CCCCCCCEEEEEEECCCCEEEEECCCCCHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEE
PPGYPHCGETLTLALSYSIGYRAPSQQELASEVADYLLDNNLGQQRFTSATEPANPGVIS
CCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCC
QDHQLGIMSLLSQLAQDPTSYQVVLGKLLSQNRFELDICEGEEAYNADDLQDAFEQGAGV
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHCCCC
NRIGGLKVLRLENDTQSRLFINGEIYELPNTPEAVLIQLSDHVSFDSDSAMALCEHAEVQ
CCCCCEEEEEECCCCCCEEEECCEEEECCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHH
ELLLKLINQGLYYLSDDEA
HHHHHHHHCCCEEEECCCC
>Mature Secondary Structure
MYTLNLDIAQFLKEHWQQKPVVIKGAFPDFEDPISADELAGLACEEEITSRIVVTQKDNW
CEEECHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHCCHHHHHHHCEEEEEECCCC
EVIQGPFEDYDNYGETHWQLLVQAVNHWYPDSQPLVEAFRFLPDWRFDDLMVSFATPSGG
CEECCCHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCC
VGPHVDNYDVFIIQGEGERRWTVGANTPQQRRGGNPNSPLVEDFEPIIDVVLEKGDVLYI
CCCCCCCEEEEEEECCCCEEEEECCCCCHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEE
PPGYPHCGETLTLALSYSIGYRAPSQQELASEVADYLLDNNLGQQRFTSATEPANPGVIS
CCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCC
QDHQLGIMSLLSQLAQDPTSYQVVLGKLLSQNRFELDICEGEEAYNADDLQDAFEQGAGV
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHCCCC
NRIGGLKVLRLENDTQSRLFINGEIYELPNTPEAVLIQLSDHVSFDSDSAMALCEHAEVQ
CCCCCEEEEEECCCCCCEEEECCEEEECCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHH
ELLLKLINQGLYYLSDDEA
HHHHHHHHCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]