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The map label for this gene is ywbI [H]

Identifier: 117920138

GI number: 117920138

Start: 1989085

End: 1989966

Strand: Reverse

Name: ywbI [H]

Synonym: Shewana3_1691

Alternate gene names: 117920138

Gene position: 1989966-1989085 (Counterclockwise)

Preceding gene: 117920143

Following gene: 117920133

Centisome position: 40.02

GC content: 50.57

Gene sequence:

>882_bases
ATGGATATACGCCAACTTAAACATTTAGATGCGCTGGCCAATACCGGCAGTTTTACCGCGGCGGCCAAGAAGCTCAATAT
GGCGCAGCCGGCCCTAAGCCAAAGCATTAAACGGCTTGAGCAGTCGCTTGGAGTGACACTGATTAATCGCACCAGCAATA
AGAATGACAAGCACCTCGCGCTCACCGCCGAAGGATTAGTGCTGCATCAACATGCCACTTTGATCCTAAAACAAATCAAA
CAGGCCGAAGCGCAAATCCGCGCCATGGCGAATCTCACCTCAGGGGAAGTGCGGATAGCGGTGCCGGGCATGCTGGGCTC
CTTCTATCTGCCCTCTCGTCTCATGGCGTTTCGCCATCAATATCCCGAGCTAAAGCTCTCACTGTTTGAAGGCGGTACCC
GTGACGCGCTGCGGATGTTACAGCAGGAAGAAGTAGATATCGCCATCATTACCGCCCAAGATTTACAGAGTGACTTCGAT
AGCCAATTATTGATCCGTGAACAGATGGTGATCGCCATGGGCGCCGAGCACCCGCTCGCCGATCATCCTGCCGTCAGCCT
CAACGACTTCTTTGACCATGAATTAGTGATGTTTAAAACTGGCTATTTCCACCGGGAATGGATCCTCTCCCAGGCCAAAG
AGCTGGGTAAAAAGCCCAATATTGCCTTTGAGACCAACCTGATTAACTTAATCAAACAGATTGTGTCACAGGGATTTGGT
ATTACTAGCGTGCTCGAAATGGCCATCAGTCCAAAAGACGACATTCTCGCCAAACCCTTTGACCCACCGGTGTTTTTAAA
TCTGCATATCGCGTGGAAAAAGCAGCGCCCCGTCAGCCAAGCCGACCGCGCCTTTGTGGAATTTTTAATGAAAAACCGTT
AA

Upstream 100 bases:

>100_bases
GCATTATTAACCCTTAAAGCACAGTGCCCTCAAGCATAAGAATAATCGTGCATAAGTGCGCTTGAGCATAAGTACCATCC
AGCATAAAAGATGAATCATC

Downstream 100 bases:

>100_bases
CACAAAGCAATAAAAAGGGCCGATTGCTCGGCCCTTTTAATGCGTCACCTAACGTTTAGGTGAAATCATTTTACTCGTCG
CAGATTAACGCTGTTTACGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MDIRQLKHLDALANTGSFTAAAKKLNMAQPALSQSIKRLEQSLGVTLINRTSNKNDKHLALTAEGLVLHQHATLILKQIK
QAEAQIRAMANLTSGEVRIAVPGMLGSFYLPSRLMAFRHQYPELKLSLFEGGTRDALRMLQQEEVDIAIITAQDLQSDFD
SQLLIREQMVIAMGAEHPLADHPAVSLNDFFDHELVMFKTGYFHREWILSQAKELGKKPNIAFETNLINLIKQIVSQGFG
ITSVLEMAISPKDDILAKPFDPPVFLNLHIAWKKQRPVSQADRAFVEFLMKNR

Sequences:

>Translated_293_residues
MDIRQLKHLDALANTGSFTAAAKKLNMAQPALSQSIKRLEQSLGVTLINRTSNKNDKHLALTAEGLVLHQHATLILKQIK
QAEAQIRAMANLTSGEVRIAVPGMLGSFYLPSRLMAFRHQYPELKLSLFEGGTRDALRMLQQEEVDIAIITAQDLQSDFD
SQLLIREQMVIAMGAEHPLADHPAVSLNDFFDHELVMFKTGYFHREWILSQAKELGKKPNIAFETNLINLIKQIVSQGFG
ITSVLEMAISPKDDILAKPFDPPVFLNLHIAWKKQRPVSQADRAFVEFLMKNR
>Mature_293_residues
MDIRQLKHLDALANTGSFTAAAKKLNMAQPALSQSIKRLEQSLGVTLINRTSNKNDKHLALTAEGLVLHQHATLILKQIK
QAEAQIRAMANLTSGEVRIAVPGMLGSFYLPSRLMAFRHQYPELKLSLFEGGTRDALRMLQQEEVDIAIITAQDLQSDFD
SQLLIREQMVIAMGAEHPLADHPAVSLNDFFDHELVMFKTGYFHREWILSQAKELGKKPNIAFETNLINLIKQIVSQGFG
ITSVLEMAISPKDDILAKPFDPPVFLNLHIAWKKQRPVSQADRAFVEFLMKNR

Specific function: Positive Regulatory Protein For The Cyn Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=263, Percent_Identity=31.1787072243346, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1790399, Length=266, Percent_Identity=27.8195488721804, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI145693105, Length=292, Percent_Identity=27.7397260273973, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1787601, Length=199, Percent_Identity=30.6532663316583, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1787879, Length=247, Percent_Identity=27.5303643724696, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1786401, Length=292, Percent_Identity=26.7123287671233, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788481, Length=295, Percent_Identity=25.4237288135593, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787530, Length=257, Percent_Identity=23.7354085603113, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1788297, Length=179, Percent_Identity=31.2849162011173, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788887, Length=257, Percent_Identity=27.6264591439689, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1790262, Length=244, Percent_Identity=27.4590163934426, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI2367136, Length=276, Percent_Identity=25, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788296, Length=253, Percent_Identity=27.2727272727273, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788748, Length=289, Percent_Identity=22.4913494809689, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1789639, Length=132, Percent_Identity=28.7878787878788, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI87081904, Length=236, Percent_Identity=26.6949152542373, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789506, Length=159, Percent_Identity=26.4150943396226, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1789440, Length=251, Percent_Identity=25.0996015936255, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32947; Mature: 32947

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIRQLKHLDALANTGSFTAAAKKLNMAQPALSQSIKRLEQSLGVTLINRTSNKNDKHLA
CCHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCEEEEECCCCCCCCEEE
LTAEGLVLHQHATLILKQIKQAEAQIRAMANLTSGEVRIAVPGMLGSFYLPSRLMAFRHQ
EEECCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHC
YPELKLSLFEGGTRDALRMLQQEEVDIAIITAQDLQSDFDSQLLIREQMVIAMGAEHPLA
CCCEEEEEECCCCHHHHHHHHHCCCCEEEEEHHHHHCCHHHHHHHHHHHHHHCCCCCCCC
DHPAVSLNDFFDHELVMFKTGYFHREWILSQAKELGKKPNIAFETNLINLIKQIVSQGFG
CCCCCCHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHCCCC
ITSVLEMAISPKDDILAKPFDPPVFLNLHIAWKKQRPVSQADRAFVEFLMKNR
HHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MDIRQLKHLDALANTGSFTAAAKKLNMAQPALSQSIKRLEQSLGVTLINRTSNKNDKHLA
CCHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCEEEEECCCCCCCCEEE
LTAEGLVLHQHATLILKQIKQAEAQIRAMANLTSGEVRIAVPGMLGSFYLPSRLMAFRHQ
EEECCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHC
YPELKLSLFEGGTRDALRMLQQEEVDIAIITAQDLQSDFDSQLLIREQMVIAMGAEHPLA
CCCEEEEEECCCCHHHHHHHHHCCCCEEEEEHHHHHCCHHHHHHHHHHHHHHCCCCCCCC
DHPAVSLNDFFDHELVMFKTGYFHREWILSQAKELGKKPNIAFETNLINLIKQIVSQGFG
CCCCCCHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHCCCC
ITSVLEMAISPKDDILAKPFDPPVFLNLHIAWKKQRPVSQADRAFVEFLMKNR
HHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]