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The map label for this gene is ygiD [H]

Identifier: 117920132

GI number: 117920132

Start: 1979907

End: 1980716

Strand: Direct

Name: ygiD [H]

Synonym: Shewana3_1685

Alternate gene names: 117920132

Gene position: 1979907-1980716 (Clockwise)

Preceding gene: 117920131

Following gene: 117920134

Centisome position: 39.82

GC content: 52.35

Gene sequence:

>810_bases
ATGACGCACGCGAATTCCGCTTTAATGCCAGTGTTATTTGTTCCCCATGGTGGCGGGCCATTACCGCTACTCAATGATGT
AAATCATCTGGAGTTAAGGGCATTTTTATCCAAGGTTTCGGATACTATCCCGACACCCAAGGCCATTGTATTGGTGACGG
CCCACTGGGAAGAGGCGCAGGTGACACTGTCGAGCCATCCCCATCCTGGCATGTTGTTCGATTACTATGGTTTTCCCCCT
GAGGCCTATACGCTTTCTTATCCTGCGCCCGGTGAGCCACAGCTTGCCGAAACGATTGCCGGTTTGCTTAAGGCGAGTGG
AATTGAGGTGCGGCTCGACAATCAGCGCGCCTTCGATCACGGCACCTTTGTGCCACTTAAGTTGATGTATCCTGAGGCGA
ATATTCCTGTGGTGCAAATGTCCTTAGTGCGGCACCTCGACCCGAGTGCCCATATCGCGATCGGCGAGGCGCTTGCGGCA
TTGCGCGCGCAAGGGGTGTTGATTGTCGGTTCTGGCATGTCGTTTCACAATATGCGCGCGTTTTTCTCCGGCGATCCTAA
GGTGTTGCCTCGCAGCCAAGCGTTTGATACTTGGTTAACCGATGTAGTGACATCAGGCGATAGCCACGCCAAGGCACAAT
TAATCGATTGGCAATCGGCGCCAGAGGCGCGTTTTAGCCACCCAAGGGAAGAGCACTTAATCCCTTTACATGTGTGTTTT
GGGGCGGCGCATTTGCAGACGCCAAAAGCTATGCATCAATTTAGTGGCGTGTTATTTAACACCGCAATATCGGGTTATCT
CTGGTCTTAA

Upstream 100 bases:

>100_bases
AGCTGGTGGACATGAAAGCGGCTTTCTAATTCTTAGTCACAAGGCTGGCAAGATCTGATTTACAAGTGATAACTAACGGT
TTCATCAAGAGAAGTTTATT

Downstream 100 bases:

>100_bases
TTTGCCCCTAAAAGCAAAAGGTTCGTCATGTTGCGTATTAAACGCTTCGTGACGAACCTTTTGTATTTTAAGCCTGGTCT
ATTTTACTAGCCGCCCTGTG

Product: extradiol ring-cleavage dioxygenase III subunit B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 268

Protein sequence:

>269_residues
MTHANSALMPVLFVPHGGGPLPLLNDVNHLELRAFLSKVSDTIPTPKAIVLVTAHWEEAQVTLSSHPHPGMLFDYYGFPP
EAYTLSYPAPGEPQLAETIAGLLKASGIEVRLDNQRAFDHGTFVPLKLMYPEANIPVVQMSLVRHLDPSAHIAIGEALAA
LRAQGVLIVGSGMSFHNMRAFFSGDPKVLPRSQAFDTWLTDVVTSGDSHAKAQLIDWQSAPEARFSHPREEHLIPLHVCF
GAAHLQTPKAMHQFSGVLFNTAISGYLWS

Sequences:

>Translated_269_residues
MTHANSALMPVLFVPHGGGPLPLLNDVNHLELRAFLSKVSDTIPTPKAIVLVTAHWEEAQVTLSSHPHPGMLFDYYGFPP
EAYTLSYPAPGEPQLAETIAGLLKASGIEVRLDNQRAFDHGTFVPLKLMYPEANIPVVQMSLVRHLDPSAHIAIGEALAA
LRAQGVLIVGSGMSFHNMRAFFSGDPKVLPRSQAFDTWLTDVVTSGDSHAKAQLIDWQSAPEARFSHPREEHLIPLHVCF
GAAHLQTPKAMHQFSGVLFNTAISGYLWS
>Mature_268_residues
THANSALMPVLFVPHGGGPLPLLNDVNHLELRAFLSKVSDTIPTPKAIVLVTAHWEEAQVTLSSHPHPGMLFDYYGFPPE
AYTLSYPAPGEPQLAETIAGLLKASGIEVRLDNQRAFDHGTFVPLKLMYPEANIPVVQMSLVRHLDPSAHIAIGEALAAL
RAQGVLIVGSGMSFHNMRAFFSGDPKVLPRSQAFDTWLTDVVTSGDSHAKAQLIDWQSAPEARFSHPREEHLIPLHVCFG
AAHLQTPKAMHQFSGVLFNTAISGYLWS

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=246, Percent_Identity=35.3658536585366, Blast_Score=134, Evalue=8e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 29362; Mature: 29231

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHANSALMPVLFVPHGGGPLPLLNDVNHLELRAFLSKVSDTIPTPKAIVLVTAHWEEAQ
CCCCCCCCEEEEEEECCCCCCCHHCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEE
VTLSSHPHPGMLFDYYGFPPEAYTLSYPAPGEPQLAETIAGLLKASGIEVRLDNQRAFDH
EEECCCCCCCEEEEECCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCC
GTFVPLKLMYPEANIPVVQMSLVRHLDPSAHIAIGEALAALRAQGVLIVGSGMSFHNMRA
CCEEEEEEECCCCCCCCHHHHHHHHCCCCCEEHHHHHHHHHHHCCEEEEECCCCHHHEEE
FFSGDPKVLPRSQAFDTWLTDVVTSGDSHAKAQLIDWQSAPEARFSHPREEHLIPLHVCF
EECCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHCCCHHHCEEEEEEEE
GAAHLQTPKAMHQFSGVLFNTAISGYLWS
CHHHCCCHHHHHHHHHHHHHHHHCCEECC
>Mature Secondary Structure 
THANSALMPVLFVPHGGGPLPLLNDVNHLELRAFLSKVSDTIPTPKAIVLVTAHWEEAQ
CCCCCCCEEEEEEECCCCCCCHHCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEE
VTLSSHPHPGMLFDYYGFPPEAYTLSYPAPGEPQLAETIAGLLKASGIEVRLDNQRAFDH
EEECCCCCCCEEEEECCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCC
GTFVPLKLMYPEANIPVVQMSLVRHLDPSAHIAIGEALAALRAQGVLIVGSGMSFHNMRA
CCEEEEEEECCCCCCCCHHHHHHHHCCCCCEEHHHHHHHHHHHCCEEEEECCCCHHHEEE
FFSGDPKVLPRSQAFDTWLTDVVTSGDSHAKAQLIDWQSAPEARFSHPREEHLIPLHVCF
EECCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHCCCHHHCEEEEEEEE
GAAHLQTPKAMHQFSGVLFNTAISGYLWS
CHHHCCCHHHHHHHHHHHHHHHHCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]