BacMap

Definition	Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence.
Accession	NC_008577
Length	4,972,204

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The map label for this gene is ucpA [C]

Identifier: 117920134

GI number: 117920134

Start: 1982069

End: 1983022

Strand: Direct

Name: ucpA [C]

Synonym: Shewana3_1687

Alternate gene names: 117920134

Gene position: 1982069-1983022 (Clockwise)

Preceding gene: 117920132

Following gene: 117920135

Centisome position: 39.86

GC content: 51.05

Gene sequence:

>954_bases
ATGCGTTTCGATAATCAAGTGGCGTTGGTAACGGGAGCAGGCTCCGGGCTAGGGAGAGCCTATGCCATTATGTTGGCTGA
GCGGGGCGCCAAATTGGTATTAGTTGACCAACCTAAGGGACGTCCATCCCAAGGCGAGGCATTGAGGGCAACTAGCTCTT
CTAACTTAACTCAGGTAACTAACACAGAACTGCAGCAAACCCATGAGGCCATTTTGAAGCTCGGGGGAGAATGCCTGTAT
TTTGAAGTGGATGTTAGCCAGCAGGATGACGTCAAGGCGATGGTGCATCGCCTACAGCAAGATTGGCAACGCGTGGATAT
TTTGGTCAATAACGCCGGGGTTTACGGCGCGTGCTCCTTCGAGCATATCCAACAAGCCGACTGGCAGCGACAGTTTGATG
TGGATGTGCATGGTAGCTTTTATCTGACTCAAGCAATTTGGCCGCTGATGAAGGCCCATGGCTATGGCCGAATTTTGATG
ATCACTGGGGTGTCGGCGTTGTTTGGTGACTTACATCAAGTCCCGTTTAGCGCCGCCAAGATGGCCCTCGTCGGTATGGT
TAACAGCCTTGCTTTAGAGGGCGAGCAATATAACATCCATATCAATAGTCTGTGCCCGCAGGCACTCACGGCCATGACCC
ATAAACACTTAGCGCCAGCGATTCAACCGCTGTTTTCCTTTGATACGGTCACAGCGACCATGGCATTTTTAGTCAGCCAT
GCCGCACCGAATGGCCAACATTTGCTCGCGGGGGCGGGCAGCGTGAGTCATGGGATGTTTGCCGAATTTCAGTCCATTTA
TTTCAGTGAGGGGCTGTGCACACCCGATAAACTGGTCAAGTACTGGCCTGAGTTGCATTATGCCTTTCCGATTAATCTGC
ATACCTGCGGCGAAGATAAAGTGTTGGCTTGGTCAAAACAGAGTGCCCTTGAGCATCATATTAAGATTGAGTAG

Upstream 100 bases:

>100_bases
GCCGATGAACTTCACCCCTATTTTTGCAATAACCAGAGCTGTGGTGTGAATGGTTAAGTGTGGCGTTCAGCGTTAATGTC
AATGATAAGGATACGATAGG

Downstream 100 bases:

>100_bases
TGCTTTGGGCGTGCAGAAGCCACAAGATGCAATAAGCTAACGACTCTCTACTGGTCAGCCCTAGTCTAACTGAGTTACCC
TTGGGCATTAGTTGCTAATT

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MRFDNQVALVTGAGSGLGRAYAIMLAERGAKLVLVDQPKGRPSQGEALRATSSSNLTQVTNTELQQTHEAILKLGGECLY
FEVDVSQQDDVKAMVHRLQQDWQRVDILVNNAGVYGACSFEHIQQADWQRQFDVDVHGSFYLTQAIWPLMKAHGYGRILM
ITGVSALFGDLHQVPFSAAKMALVGMVNSLALEGEQYNIHINSLCPQALTAMTHKHLAPAIQPLFSFDTVTATMAFLVSH
AAPNGQHLLAGAGSVSHGMFAEFQSIYFSEGLCTPDKLVKYWPELHYAFPINLHTCGEDKVLAWSKQSALEHHIKIE

Sequences:

>Translated_317_residues
MRFDNQVALVTGAGSGLGRAYAIMLAERGAKLVLVDQPKGRPSQGEALRATSSSNLTQVTNTELQQTHEAILKLGGECLY
FEVDVSQQDDVKAMVHRLQQDWQRVDILVNNAGVYGACSFEHIQQADWQRQFDVDVHGSFYLTQAIWPLMKAHGYGRILM
ITGVSALFGDLHQVPFSAAKMALVGMVNSLALEGEQYNIHINSLCPQALTAMTHKHLAPAIQPLFSFDTVTATMAFLVSH
AAPNGQHLLAGAGSVSHGMFAEFQSIYFSEGLCTPDKLVKYWPELHYAFPINLHTCGEDKVLAWSKQSALEHHIKIE
>Mature_317_residues
MRFDNQVALVTGAGSGLGRAYAIMLAERGAKLVLVDQPKGRPSQGEALRATSSSNLTQVTNTELQQTHEAILKLGGECLY
FEVDVSQQDDVKAMVHRLQQDWQRVDILVNNAGVYGACSFEHIQQADWQRQFDVDVHGSFYLTQAIWPLMKAHGYGRILM
ITGVSALFGDLHQVPFSAAKMALVGMVNSLALEGEQYNIHINSLCPQALTAMTHKHLAPAIQPLFSFDTVTATMAFLVSH
AAPNGQHLLAGAGSVSHGMFAEFQSIYFSEGLCTPDKLVKYWPELHYAFPINLHTCGEDKVLAWSKQSALEHHIKIE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI4504505, Length=259, Percent_Identity=35.5212355212355, Blast_Score=147, Evalue=2e-35,
Organism=Homo sapiens, GI15277342, Length=217, Percent_Identity=27.6497695852535, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI4503817, Length=199, Percent_Identity=28.1407035175879, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI210032110, Length=232, Percent_Identity=23.7068965517241, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI25282469, Length=231, Percent_Identity=27.7056277056277, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI32483357, Length=208, Percent_Identity=27.4038461538462, Blast_Score=78, Evalue=9e-15,
Organism=Homo sapiens, GI4758504, Length=212, Percent_Identity=28.7735849056604, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI142976729, Length=225, Percent_Identity=25.7777777777778, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI10190746, Length=242, Percent_Identity=26.8595041322314, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI83715985, Length=197, Percent_Identity=29.9492385786802, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI126723191, Length=208, Percent_Identity=26.9230769230769, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI40807363, Length=236, Percent_Identity=25.4237288135593, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI20149619, Length=203, Percent_Identity=29.5566502463054, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI40254992, Length=228, Percent_Identity=27.1929824561404, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI223718074, Length=214, Percent_Identity=29.9065420560748, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI7657478, Length=201, Percent_Identity=28.3582089552239, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI59889578, Length=129, Percent_Identity=28.6821705426357, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI19923817, Length=210, Percent_Identity=26.1904761904762, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI10190704, Length=207, Percent_Identity=27.0531400966184, Blast_Score=68, Evalue=1e-11,
Organism=Escherichia coli, GI87082100, Length=206, Percent_Identity=29.6116504854369, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1787905, Length=223, Percent_Identity=29.1479820627803, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1787335, Length=206, Percent_Identity=28.6407766990291, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI87082160, Length=201, Percent_Identity=28.8557213930348, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1789057, Length=201, Percent_Identity=30.3482587064677, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788459, Length=262, Percent_Identity=26.3358778625954, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1789208, Length=216, Percent_Identity=24.537037037037, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1790717, Length=198, Percent_Identity=21.7171717171717, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI2367175, Length=205, Percent_Identity=26.3414634146341, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17568967, Length=292, Percent_Identity=33.2191780821918, Blast_Score=147, Evalue=7e-36,
Organism=Caenorhabditis elegans, GI17564282, Length=223, Percent_Identity=25.1121076233184, Blast_Score=78, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17508895, Length=201, Percent_Identity=29.8507462686567, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17561402, Length=211, Percent_Identity=27.4881516587678, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17555706, Length=222, Percent_Identity=25.6756756756757, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17538182, Length=212, Percent_Identity=26.8867924528302, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI193203117, Length=231, Percent_Identity=25.5411255411255, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI193203115, Length=226, Percent_Identity=26.1061946902655, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI193204405, Length=218, Percent_Identity=28.8990825688073, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17562908, Length=225, Percent_Identity=28.4444444444444, Blast_Score=72, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI25147288, Length=225, Percent_Identity=23.5555555555556, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17562906, Length=224, Percent_Identity=28.125, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17560676, Length=206, Percent_Identity=27.1844660194175, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI86565303, Length=219, Percent_Identity=29.6803652968037, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI71982365, Length=161, Percent_Identity=27.3291925465839, Blast_Score=67, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=288, Percent_Identity=29.5138888888889, Blast_Score=134, Evalue=2e-32,
Organism=Drosophila melanogaster, GI18859837, Length=254, Percent_Identity=35.0393700787402, Blast_Score=149, Evalue=2e-36,
Organism=Drosophila melanogaster, GI281364892, Length=192, Percent_Identity=30.2083333333333, Blast_Score=88, Evalue=6e-18,
Organism=Drosophila melanogaster, GI17737361, Length=214, Percent_Identity=29.4392523364486, Blast_Score=85, Evalue=7e-17,
Organism=Drosophila melanogaster, GI24639444, Length=205, Percent_Identity=27.3170731707317, Blast_Score=75, Evalue=7e-14,
Organism=Drosophila melanogaster, GI21357041, Length=206, Percent_Identity=27.6699029126214, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI23397609, Length=218, Percent_Identity=27.0642201834862, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI28571526, Length=216, Percent_Identity=26.3888888888889, Blast_Score=72, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24640492, Length=207, Percent_Identity=22.2222222222222, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI21358495, Length=213, Percent_Identity=26.7605633802817, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21356301, Length=199, Percent_Identity=24.1206030150754, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI221510726, Length=241, Percent_Identity=25.7261410788382, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 34904; Mature: 34904

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFDNQVALVTGAGSGLGRAYAIMLAERGAKLVLVDQPKGRPSQGEALRATSSSNLTQVT
CCCCCEEEEEEECCCCCCHHEEEEEECCCCEEEEEECCCCCCCCCCEEEECCCCCCEEEH
NTELQQTHEAILKLGGECLYFEVDVSQQDDVKAMVHRLQQDWQRVDILVNNAGVYGACSF
HHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHEEEEEEECCCEEEECCH
EHIQQADWQRQFDVDVHGSFYLTQAIWPLMKAHGYGRILMITGVSALFGDLHQVPFSAAK
HHHHHHCCCCCCCEEECCCEEHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHCCHHHHH
MALVGMVNSLALEGEQYNIHINSLCPQALTAMTHKHLAPAIQPLFSFDTVTATMAFLVSH
HHHHHHHHHHEECCCEEEEEEHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAPNGQHLLAGAGSVSHGMFAEFQSIYFSEGLCTPDKLVKYWPELHYAFPINLHTCGEDK
CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEEEEEEECCCCC
VLAWSKQSALEHHIKIE
EEEECHHHHHHHCEECC
>Mature Secondary Structure
MRFDNQVALVTGAGSGLGRAYAIMLAERGAKLVLVDQPKGRPSQGEALRATSSSNLTQVT
CCCCCEEEEEEECCCCCCHHEEEEEECCCCEEEEEECCCCCCCCCCEEEECCCCCCEEEH
NTELQQTHEAILKLGGECLYFEVDVSQQDDVKAMVHRLQQDWQRVDILVNNAGVYGACSF
HHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHEEEEEEECCCEEEECCH
EHIQQADWQRQFDVDVHGSFYLTQAIWPLMKAHGYGRILMITGVSALFGDLHQVPFSAAK
HHHHHHCCCCCCCEEECCCEEHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHCCHHHHH
MALVGMVNSLALEGEQYNIHINSLCPQALTAMTHKHLAPAIQPLFSFDTVTATMAFLVSH
HHHHHHHHHHEECCCEEEEEEHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAPNGQHLLAGAGSVSHGMFAEFQSIYFSEGLCTPDKLVKYWPELHYAFPINLHTCGEDK
CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEEEEEEECCCCC
VLAWSKQSALEHHIKIE
EEEECHHHHHHHCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230 [H]