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The map label for this gene is rpoE [C]

Identifier: 117919901

GI number: 117919901

Start: 1684895

End: 1685458

Strand: Reverse

Name: rpoE [C]

Synonym: Shewana3_1453

Alternate gene names: 117919901

Gene position: 1685458-1684895 (Counterclockwise)

Preceding gene: 117919902

Following gene: 117919900

Centisome position: 33.9

GC content: 48.4

Gene sequence:

>564_bases
ATGTTTGCTAACTGGCGAAAGAAATCCGTCGAGCCTGCGGTCTCTTCTGACATGCTGAGCAAACAACGACGATACAATAG
CCTAGTCAAGGCGCTGCACGCCGATATCTTCCGCTATGCCTTTTGGTTATGCGGCGATAAGCAGGTGGCAGAGGACATCA
CCCAAGAAACCTTCTTGCGGGCATGGCGCTCTTTAGATTCCCTACAGGATGATAAAGCGGCGAAGGCTTGGCTGATCACG
ATTCTGAGGCGCGAAAATGCCCGTCGATTCGAGCGCAAACAATTCGATTACGCCGATGTCGAGCAAGACAGCTTAGAAGA
TCACATCGCCTCCAGCACAGAAGAGCAAACTGAGCAATATTGGCTGAGGCGACAAATCGCTAAGCTGGATATTGAATATC
GGGAACCCTTATTACTGCAATTGATTGGCGGTTTTAGTGGGGATGAAATCGCCCAACTATTGGAACTGAATCGTAATACC
GTGATGACGCGTTTATTTCGGGCGAGGAACCAATTGAAAGAATTACTTGAGAAAACTGAGGTAAGAGGCCAATCCAATGG
ATGA

Upstream 100 bases:

>100_bases
TGGCTAAACAGAGACGGATAAATCAAAACGACGCACGGCTTAATCGAATGAGTAAGGTGTAATCTTTTGAATCGTAAAAT
AAAAAGAAAATATCGAAAAA

Downstream 100 bases:

>100_bases
GCTTAAATTTAGACGTCAAGCTTATGAAGATCCTCATAATCAAGATCCTGAGTTTGTTGCGCAAATGCAGGAAAGCGCAG
AAAACCAAGCATTCGTCGCT

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor RpoE; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma-E Factor; Sigma-; ECF Subfamily RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma Factor SigE; RNA Polymerase Sigma-70 Factor ECF Subfamily Protein; RNA Polymerase Sigma Factor SigW; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Subunit Ecf Family; Sigma-70 Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma-E Factor Protein; RNA Polymerase Sigma-70factor; RNA Polymerase Factor Sigma C; RNA Polymerase ECF-Subfamily Sigma Factor; Transcriptional Regulator LuxR Family; ECF-Family Protein Sigma Factor H; RNA Polymerase Sigma-C Factor; RNA Polymerase Sigma-24 Subunit RpoE; DNA-Directed RNA Polymeracialized Sigma Subunit; ECF-Family Sigma Factor E; RNA Polymerase Sigma Factor Sigma-70 Family; Sigma Factor; ECF SubfamilyRNA Polymerase Sigma-70 Factor

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MFANWRKKSVEPAVSSDMLSKQRRYNSLVKALHADIFRYAFWLCGDKQVAEDITQETFLRAWRSLDSLQDDKAAKAWLIT
ILRRENARRFERKQFDYADVEQDSLEDHIASSTEEQTEQYWLRRQIAKLDIEYREPLLLQLIGGFSGDEIAQLLELNRNT
VMTRLFRARNQLKELLEKTEVRGQSNG

Sequences:

>Translated_187_residues
MFANWRKKSVEPAVSSDMLSKQRRYNSLVKALHADIFRYAFWLCGDKQVAEDITQETFLRAWRSLDSLQDDKAAKAWLIT
ILRRENARRFERKQFDYADVEQDSLEDHIASSTEEQTEQYWLRRQIAKLDIEYREPLLLQLIGGFSGDEIAQLLELNRNT
VMTRLFRARNQLKELLEKTEVRGQSNG
>Mature_187_residues
MFANWRKKSVEPAVSSDMLSKQRRYNSLVKALHADIFRYAFWLCGDKQVAEDITQETFLRAWRSLDSLQDDKAAKAWLIT
ILRRENARRFERKQFDYADVEQDSLEDHIASSTEEQTEQYWLRRQIAKLDIEYREPLLLQLIGGFSGDEIAQLLELNRNT
VMTRLFRARNQLKELLEKTEVRGQSNG

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22089; Mature: 22089

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFANWRKKSVEPAVSSDMLSKQRRYNSLVKALHADIFRYAFWLCGDKQVAEDITQETFLR
CCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
AWRSLDSLQDDKAAKAWLITILRRENARRFERKQFDYADVEQDSLEDHIASSTEEQTEQY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHH
WLRRQIAKLDIEYREPLLLQLIGGFSGDEIAQLLELNRNTVMTRLFRARNQLKELLEKTE
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VRGQSNG
HCCCCCC
>Mature Secondary Structure
MFANWRKKSVEPAVSSDMLSKQRRYNSLVKALHADIFRYAFWLCGDKQVAEDITQETFLR
CCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
AWRSLDSLQDDKAAKAWLITILRRENARRFERKQFDYADVEQDSLEDHIASSTEEQTEQY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHH
WLRRQIAKLDIEYREPLLLQLIGGFSGDEIAQLLELNRNTVMTRLFRARNQLKELLEKTE
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VRGQSNG
HCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA