| Definition | Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008577 |
| Length | 4,972,204 |
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The map label for this gene is yjbH [H]
Identifier: 117919841
GI number: 117919841
Start: 1607657
End: 1610032
Strand: Reverse
Name: yjbH [H]
Synonym: Shewana3_1393
Alternate gene names: 117919841
Gene position: 1610032-1607657 (Counterclockwise)
Preceding gene: 117919842
Following gene: 117919837
Centisome position: 32.38
GC content: 43.14
Gene sequence:
>2376_bases ATGAAAAACTCGACTCCCACTTTTCCCTCTTTCGGGCGTTTATCAGCGCTATCTTTAGCACTGCTACCATTATTACACGT TAGCGCCGATGAATTTTCTTACCCAACATCGTTGCCTTCACAGTCTGACTTTGGTGGTGTAGGTTTAATGCAAATGCCAA CAGGCCGTATGACGCCTGAAGGTGAATTTAACTTTGCCACGACTTACAACGATGACTATCAGCATTTTAGCGCTTCAGTG CAGCTCTTCCCTTGGTTTGAAACAACAATACGCTACACCCTAGTACAAGACCTGCTTTACAGTAGCGACCCCAACTTTAG TGGTAATACTAAATACACGGATAAAGGCATAGACTTTAAAGTTCGTCTACTCGAAGAAAGTAACTGGCTGCCTGAAACCT CTATTGGGGTGAGGGACTTTGGTGGCACTGGTTTATTTGATGGTGAATTTGTTGCTGCGACAAAGCGCGTCGGTCCACTC GATTTTACTCTAGGTATAGGTTGGGGCTATATCGGCAATAGCGGTAATCTCACTTCCGATAAAAAAGATCTTAATTACAA CTGTGATAGAGATACTTCTTATGGGGGTAAAGGTGGCACTGTTGATTACCAGCGTTGGTTTAAGGGCTGCGCATCCCTCT TTGGTGGCGTTGAATATCAGACTCCTTGGGAACCTTTACGTTTGAAAGTCGAATACGATGGTAACGACTATCAATCAGAC TTTCCCGTTGTTCGTGGTGGTATAGATATGCCTCAGGACAGCAAGTTTAACTATGGAATGCTCTATCGTTTTGGAGACTG GGGCGATCTACATTTAAGTTATGAGCGTGGCAATACTTGGACACTTGGCTTTAGTCTGCAGACCAATTTTAATACCTTGT CACAGATTAAACGAGATCCAAAGGCAGCTAAATATAAGCCACTTCCTGCCGCGCCATTAACCCTTACGCAAACAGAATCC TCTGCTCAAGTAAACACACTAAGAGCCGAACAAGCGACTGTGAGTACAGAAACTTCAACGCATAAATCAGAAGTGCAAAA TGATGAAGTAGCAAATCTAGAGCTTGTAAATGCATCCAGTCAGACTGCTGCGAATCCCCTGGTGGATTGGAATAAAATTG CTCAGGATTTACAAACTATTGCTGGTTACGCAAACGCCAAAATTTACCTTGATAATGACAGTATTACCGTTGTAGGTGAA CAGACAAAATTCCGCGATAGAAATGAAGCGCATAAAAGAGCTGCCACCATTCTAGCCAACAATACTGATGCCAACTTTAT TAAAGAGTATCGACTAATTGAGACTCGTTATAGCCAACCAATAACGGAAACCCGTATTGATGCTCAGAAGTTTGCCAAAG TCGCAAGTTATGGCTATCTCAATGCCAAAGTCACTGATGCTAGTGTTGTGAGTATTCCAAGCTTACCTCAGGGACAACTA GTCAATAATACTGATAAAGATTGGCTAGATAAGCTTAGTTTTGATGTTTCGCCTACCATGTCCCAATCCTTCGGCGGTTC CGAAGGGTTTTATATGTTTAGTATTGGAATGACTGGCAGTGCAAGTTACCGATTTACCGATAACTTTGAGTTTTCAAGCT CTCTTTATCTTAACCTCTACGATAACTTTGATAAGTTTTTATACGAAGTTCCACCCGATGGCACTGACTTAAAACGTGTT CGCACCCTGGTTCGTCAATATATTCATGATAATCCTGTACGAGTGAATAACCTGCAACTAACCTGGATGGATAATTTAAC CGATAACATTTCTTTCCAAGCCTACGGCGGCTATTTAGAAATGATGTATGGTGGTGTGGGCACAGAGGTTCTCTATCGAC CACTTAACAGCCAATGGGCTTTTGGGGTTGATGTGAATTATGTTAAGCAGCGCGATCCAGACAGCATGCTAGGCTTCTTT GAAGATGAGCATCAATTTGACTCACTCACTAACCGCCCCTATCGAGTGCAAACGGGTACGGTAACAGGACACGCATCAAT CTATTATCAACCTGACTGGTTCCCCAATACTTTACTGAGAATCAGTGCCGGCCAGTATTTGGCCGAGGATAAAGGAGTAA CAGTTGATTTCTCAAAACAATTCGATAGTGGGGTGATTGTTGGCGCTTTCGCCACTAAGACTAATCTTTCATCAGAGGAG TATGGTGAGGGCAGTTTTACTAAAGGCTTCTACGTGTCGATTCCATTTGACTTGATGACCATTAAATCAACCCATAGCCG GGCGACAATCAGTTGGATGCCACTGACACGCGATGGTGGTCAAACATTAGGGCGCAAGTACAGTCTATATGATGTAATGG ATGCTAGAGATCCTTGGTTCACACGCGCAAGCATCACAAGTGAGTCTGTCAAATAA
Upstream 100 bases:
>100_bases CTCCAGGCGCCACACTCTTCGTTGAGTTTTCAGGCCTTTTTGATGACTATTCCACATTAAACAACAACATCATTGAATTA CTCAAAAATCGGGCTCTGTA
Downstream 100 bases:
>100_bases CGCAAACAAAATGCCGCTAGTACCTTAGGCGCTAGCGGCAGCATCCCTTTCAGACAGAATCGGCGTTTCATTTAGCAGCG GCCAGTCAATCGCAAACTCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 791; Mature: 791
Protein sequence:
>791_residues MKNSTPTFPSFGRLSALSLALLPLLHVSADEFSYPTSLPSQSDFGGVGLMQMPTGRMTPEGEFNFATTYNDDYQHFSASV QLFPWFETTIRYTLVQDLLYSSDPNFSGNTKYTDKGIDFKVRLLEESNWLPETSIGVRDFGGTGLFDGEFVAATKRVGPL DFTLGIGWGYIGNSGNLTSDKKDLNYNCDRDTSYGGKGGTVDYQRWFKGCASLFGGVEYQTPWEPLRLKVEYDGNDYQSD FPVVRGGIDMPQDSKFNYGMLYRFGDWGDLHLSYERGNTWTLGFSLQTNFNTLSQIKRDPKAAKYKPLPAAPLTLTQTES SAQVNTLRAEQATVSTETSTHKSEVQNDEVANLELVNASSQTAANPLVDWNKIAQDLQTIAGYANAKIYLDNDSITVVGE QTKFRDRNEAHKRAATILANNTDANFIKEYRLIETRYSQPITETRIDAQKFAKVASYGYLNAKVTDASVVSIPSLPQGQL VNNTDKDWLDKLSFDVSPTMSQSFGGSEGFYMFSIGMTGSASYRFTDNFEFSSSLYLNLYDNFDKFLYEVPPDGTDLKRV RTLVRQYIHDNPVRVNNLQLTWMDNLTDNISFQAYGGYLEMMYGGVGTEVLYRPLNSQWAFGVDVNYVKQRDPDSMLGFF EDEHQFDSLTNRPYRVQTGTVTGHASIYYQPDWFPNTLLRISAGQYLAEDKGVTVDFSKQFDSGVIVGAFATKTNLSSEE YGEGSFTKGFYVSIPFDLMTIKSTHSRATISWMPLTRDGGQTLGRKYSLYDVMDARDPWFTRASITSESVK
Sequences:
>Translated_791_residues MKNSTPTFPSFGRLSALSLALLPLLHVSADEFSYPTSLPSQSDFGGVGLMQMPTGRMTPEGEFNFATTYNDDYQHFSASV QLFPWFETTIRYTLVQDLLYSSDPNFSGNTKYTDKGIDFKVRLLEESNWLPETSIGVRDFGGTGLFDGEFVAATKRVGPL DFTLGIGWGYIGNSGNLTSDKKDLNYNCDRDTSYGGKGGTVDYQRWFKGCASLFGGVEYQTPWEPLRLKVEYDGNDYQSD FPVVRGGIDMPQDSKFNYGMLYRFGDWGDLHLSYERGNTWTLGFSLQTNFNTLSQIKRDPKAAKYKPLPAAPLTLTQTES SAQVNTLRAEQATVSTETSTHKSEVQNDEVANLELVNASSQTAANPLVDWNKIAQDLQTIAGYANAKIYLDNDSITVVGE QTKFRDRNEAHKRAATILANNTDANFIKEYRLIETRYSQPITETRIDAQKFAKVASYGYLNAKVTDASVVSIPSLPQGQL VNNTDKDWLDKLSFDVSPTMSQSFGGSEGFYMFSIGMTGSASYRFTDNFEFSSSLYLNLYDNFDKFLYEVPPDGTDLKRV RTLVRQYIHDNPVRVNNLQLTWMDNLTDNISFQAYGGYLEMMYGGVGTEVLYRPLNSQWAFGVDVNYVKQRDPDSMLGFF EDEHQFDSLTNRPYRVQTGTVTGHASIYYQPDWFPNTLLRISAGQYLAEDKGVTVDFSKQFDSGVIVGAFATKTNLSSEE YGEGSFTKGFYVSIPFDLMTIKSTHSRATISWMPLTRDGGQTLGRKYSLYDVMDARDPWFTRASITSESVK >Mature_791_residues MKNSTPTFPSFGRLSALSLALLPLLHVSADEFSYPTSLPSQSDFGGVGLMQMPTGRMTPEGEFNFATTYNDDYQHFSASV QLFPWFETTIRYTLVQDLLYSSDPNFSGNTKYTDKGIDFKVRLLEESNWLPETSIGVRDFGGTGLFDGEFVAATKRVGPL DFTLGIGWGYIGNSGNLTSDKKDLNYNCDRDTSYGGKGGTVDYQRWFKGCASLFGGVEYQTPWEPLRLKVEYDGNDYQSD FPVVRGGIDMPQDSKFNYGMLYRFGDWGDLHLSYERGNTWTLGFSLQTNFNTLSQIKRDPKAAKYKPLPAAPLTLTQTES SAQVNTLRAEQATVSTETSTHKSEVQNDEVANLELVNASSQTAANPLVDWNKIAQDLQTIAGYANAKIYLDNDSITVVGE QTKFRDRNEAHKRAATILANNTDANFIKEYRLIETRYSQPITETRIDAQKFAKVASYGYLNAKVTDASVVSIPSLPQGQL VNNTDKDWLDKLSFDVSPTMSQSFGGSEGFYMFSIGMTGSASYRFTDNFEFSSSLYLNLYDNFDKFLYEVPPDGTDLKRV RTLVRQYIHDNPVRVNNLQLTWMDNLTDNISFQAYGGYLEMMYGGVGTEVLYRPLNSQWAFGVDVNYVKQRDPDSMLGFF EDEHQFDSLTNRPYRVQTGTVTGHASIYYQPDWFPNTLLRISAGQYLAEDKGVTVDFSKQFDSGVIVGAFATKTNLSSEE YGEGSFTKGFYVSIPFDLMTIKSTHSRATISWMPLTRDGGQTLGRKYSLYDVMDARDPWFTRASITSESVK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli ymcA [H]
Homologues:
Organism=Escherichia coli, GI1790461, Length=769, Percent_Identity=45.1235370611183, Blast_Score=594, Evalue=1e-171, Organism=Escherichia coli, GI1787219, Length=775, Percent_Identity=41.9354838709677, Blast_Score=574, Evalue=1e-165,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010344 [H]
Pfam domain/function: PF06082 DUF940 [H]
EC number: NA
Molecular weight: Translated: 88844; Mature: 88844
Theoretical pI: Translated: 4.74; Mature: 4.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNSTPTFPSFGRLSALSLALLPLLHVSADEFSYPTSLPSQSDFGGVGLMQMPTGRMTPE CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC GEFNFATTYNDDYQHFSASVQLFPWFETTIRYTLVQDLLYSSDPNFSGNTKYTDKGIDFK CCEEEEEECCCCHHHEECEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCEE VRLLEESNWLPETSIGVRDFGGTGLFDGEFVAATKRVGPLDFTLGIGWGYIGNSGNLTSD EEEEECCCCCCCCCCCCEECCCCCCCCCCEEEECCCCCCEEEEEECCEEEECCCCCCCCC KKDLNYNCDRDTSYGGKGGTVDYQRWFKGCASLFGGVEYQTPWEPLRLKVEYDGNDYQSD CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCC FPVVRGGIDMPQDSKFNYGMLYRFGDWGDLHLSYERGNTWTLGFSLQTNFNTLSQIKRDP CCEEECCCCCCCCCCCCCEEEEEECCCCEEEEEEECCCEEEEEEEEECCCHHHHHHHCCC KAAKYKPLPAAPLTLTQTESSAQVNTLRAEQATVSTETSTHKSEVQNDEVANLELVNASS CCCCCCCCCCCCEEEEECCCCCEEEEEEHHHHEEECCCCCHHHHCCCCCCCEEEEECCCC QTAANPLVDWNKIAQDLQTIAGYANAKIYLDNDSITVVGEQTKFRDRNEAHKRAATILAN CCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCEEEEECCCCCCCHHHHHHHEEEEEEC NTDANFIKEYRLIETRYSQPITETRIDAQKFAKVASYGYLNAKVTDASVVSIPSLPQGQL CCCHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHCCEEEEEECCCEEEECCCCCCCCC VNNTDKDWLDKLSFDVSPTMSQSFGGSEGFYMFSIGMTGSASYRFTDNFEFSSSLYLNLY CCCCCHHHHHHHCCCCCCCHHHCCCCCCCEEEEEECCCCCCCEEEECCCCCCCEEEEEEE DNFDKFLYEVPPDGTDLKRVRTLVRQYIHDNPVRVNNLQLTWMDNLTDNISFQAYGGYLE CCCCHHEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCEEEEECCEEE MMYGGVGTEVLYRPLNSQWAFGVDVNYVKQRDPDSMLGFFEDEHQFDSLTNRPYRVQTGT EECCCCCHHHHEECCCCCEEECCCCHHHCCCCCCHHHCCCCCCHHHHHHCCCCEEEEECE VTGHASIYYQPDWFPNTLLRISAGQYLAEDKGVTVDFSKQFDSGVIVGAFATKTNLSSEE EEECEEEEECCCCCCCCEEEEECCCEEECCCCEEEEECCCCCCCEEEEEEEECCCCCCCC YGEGSFTKGFYVSIPFDLMTIKSTHSRATISWMPLTRDGGQTLGRKYSLYDVMDARDPWF CCCCCCCCCEEEEECEEEEEEECCCCCEEEEEEEEECCCCHHHCCEEEEEECCCCCCCCE TRASITSESVK EEEECCCCCCC >Mature Secondary Structure MKNSTPTFPSFGRLSALSLALLPLLHVSADEFSYPTSLPSQSDFGGVGLMQMPTGRMTPE CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC GEFNFATTYNDDYQHFSASVQLFPWFETTIRYTLVQDLLYSSDPNFSGNTKYTDKGIDFK CCEEEEEECCCCHHHEECEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCEE VRLLEESNWLPETSIGVRDFGGTGLFDGEFVAATKRVGPLDFTLGIGWGYIGNSGNLTSD EEEEECCCCCCCCCCCCEECCCCCCCCCCEEEECCCCCCEEEEEECCEEEECCCCCCCCC KKDLNYNCDRDTSYGGKGGTVDYQRWFKGCASLFGGVEYQTPWEPLRLKVEYDGNDYQSD CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCC FPVVRGGIDMPQDSKFNYGMLYRFGDWGDLHLSYERGNTWTLGFSLQTNFNTLSQIKRDP CCEEECCCCCCCCCCCCCEEEEEECCCCEEEEEEECCCEEEEEEEEECCCHHHHHHHCCC KAAKYKPLPAAPLTLTQTESSAQVNTLRAEQATVSTETSTHKSEVQNDEVANLELVNASS CCCCCCCCCCCCEEEEECCCCCEEEEEEHHHHEEECCCCCHHHHCCCCCCCEEEEECCCC QTAANPLVDWNKIAQDLQTIAGYANAKIYLDNDSITVVGEQTKFRDRNEAHKRAATILAN CCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCEEEEECCCCCCCHHHHHHHEEEEEEC NTDANFIKEYRLIETRYSQPITETRIDAQKFAKVASYGYLNAKVTDASVVSIPSLPQGQL CCCHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHCCEEEEEECCCEEEECCCCCCCCC VNNTDKDWLDKLSFDVSPTMSQSFGGSEGFYMFSIGMTGSASYRFTDNFEFSSSLYLNLY CCCCCHHHHHHHCCCCCCCHHHCCCCCCCEEEEEECCCCCCCEEEECCCCCCCEEEEEEE DNFDKFLYEVPPDGTDLKRVRTLVRQYIHDNPVRVNNLQLTWMDNLTDNISFQAYGGYLE CCCCHHEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCEEEEECCEEE MMYGGVGTEVLYRPLNSQWAFGVDVNYVKQRDPDSMLGFFEDEHQFDSLTNRPYRVQTGT EECCCCCHHHHEECCCCCEEECCCCHHHCCCCCCHHHCCCCCCHHHHHHCCCCEEEEECE VTGHASIYYQPDWFPNTLLRISAGQYLAEDKGVTVDFSKQFDSGVIVGAFATKTNLSSEE EEECEEEEECCCCCCCCEEEEECCCEEECCCCEEEEECCCCCCCEEEEEEEECCCCCCCC YGEGSFTKGFYVSIPFDLMTIKSTHSRATISWMPLTRDGGQTLGRKYSLYDVMDARDPWF CCCCCCCCCEEEEECEEEEEEECCCCCEEEEEEEEECCCCHHHCCEEEEEECCCCCCCCE TRASITSESVK EEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8265357; 9278503 [H]