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The map label for this gene is dcrA [H]

Identifier: 117919741

GI number: 117919741

Start: 1504135

End: 1506138

Strand: Reverse

Name: dcrA [H]

Synonym: Shewana3_1293

Alternate gene names: 117919741

Gene position: 1506138-1504135 (Counterclockwise)

Preceding gene: 117919743

Following gene: 117919717

Centisome position: 30.29

GC content: 49.95

Gene sequence:

>2004_bases
ATGAACTATAAAAATTGGCCTATTGCGAAACAGATTGGTGCCCTCGCTTTTATCCTTACCCTGATCATTTTCTGCATACT
GAGTACCCTCTCCTACAAATCCGCGTCAAACGTGCTCGAAGATAAAGGCATCAGTGCCATGAAAGCCGAGATGCACGCCG
TCTCCGACATGCTGGAACTGCAATACGATAGCTTGCTGCAACTAGCAAGACGCAATGCCGATGTCTTTAAGGAAATGTAC
CCCGGCCAATTTAGTCGCCCAGATAAAACCGTGAATGTACTCGGCGTCAGCACACCTGCGTTACTACATGAAAAAGAACA
AATTAACTCGTCAAAGAGTAAAGTTGACCGCTTTGCCAACCTCACAGGCGGAACCGCCACTGTGTTTGTGCGCGATGGGG
ATGACTTTGTCCGGATTGCGTCCTCGTTAAAAAAGGCCGATGGTAGCCGAGCCCTCGGTACCTTCCTCGGTAAAACCCAT
CCCGGTTATCCAACACTTATCAAAGGTGAAGTTTACGAAGGCTACGCCAAACTCTTCGGTAAAGACTACATGACAGTCTA
TCGCCCAATTAAAGATGCCCAAGGGCAAGTGATTGGGATCTTATATATCGGCTTTGAAATCACTCAATCCCTCACACAGT
TACAAGCCGCGGTGAATAAAATCACCCTAGAAGAAACCGGTAGCTTCCTGCTGATGCGCAAAGCCGACAATGTGTTGGTC
GCCAATCCCAAATTTAATGCGGGCGAGCCAGTAACTGAGTCCATGCTCGATGGATTAACCCTTAGCCAAGCCACACAGGA
TCAATCGGAGTTTCGCTACACTAACAGTAAAAACCAACCTATGTTTGCCTACACCCAAACGGTAAATGGGTGGAATTGGA
TGTTGATTGGTCAAGTGAATGCAAACGAATTAAATGAAGAGAGCCTACTGCTACTCACCATCAACGCCATAGTGGCGGTC
ACAGGTATTGTGCTTATTACCGTACTGCTATCCTTTGTGCTAATCCGCTCACTCAAGCCTTTGCATGCGCTGCAGCGCCA
TATGGAAATCCTCGGCACGGGGGACTTTAGTCATCCGCTTCCACCATCGGCCTACGATAGTCAAAACGAGGTCGACAAGA
TCACCACCAGCGTGTCGACCATGTCATCGGAATTGCGACAATTAATCAGTGCACTGCAAGCCTCAGTGCAAAGCATTGAA
CAACAAGCCTCCAAAGCACAGCGGATTGCTAAGCAAAACGGTGAAGAAGCCCAGGCATTGATGCAACAAACGGATCAAAT
CGCCACCGCGATTGAAGAAATGTCCACCTCCATCCGCGATGTCGCCAACCACGCTCAAGATGGTGCGAACCAGAGCCAAC
AAGTGGATCTCGCTGCCAAAGAAGGCCAACAGCAACAAACCCAAGTGGTGCAGGATCTGTTGAAACTAAGCCAACAACTC
AGTAGTAGCCATCAGGCCGTCGAAAAAGTCAGCCAAGAGAGTGAGGCTATCAGTAAAGTCACCGAGGTGATTAACAGCAT
TGCCGAACAAACCAACCTGCTCGCACTCAACGCGGCCATTGAAGCGGCCCGCGCAGGGGAACAGGGCCGAGGCTTTGCCG
TGGTCGCCGATGAGGTGCGAACCTTAGCCCAGCGGACACAATCCTCCATTCTGGAAATTTCGCAAACCATTGATAAGCTA
CAATCTCAAGTGAAAACGACCACCAGCCAAATGGCGCAGAGCCACCAGCTGGGTATCGCCTCGGCGAATCAAGGGGAAGA
AACCGGCAAGCAGCTGGAGGAAATCACCCGCAGAATTGGCGAACTGGCGATTAGCTCACGCAATATTGCTTCGGCGACTG
AGCAGCAAAGCAGCGTTGCCCAAGAGATCACTCATAATCTGCACCAGATAAGCGAACTGGCGAATGAAGGTGAGCACAGA
GCAGCCGAAACAGTAAACTCGGCGAATGATCTATCCTCCCTCGCCGTCGCGCTTAAACAACAAATCAGCCAATTTAAGGC
CTAA

Upstream 100 bases:

>100_bases
GAACTATTTATAAATAATAGAAAATCTTAGACCCATATCAAGACCACGACGTAAAAGTTCGGTTACATTAGCGTTAACCT
TTACCCTATAGGATCGTACA

Downstream 100 bases:

>100_bases
ATCAAATCATTGCTTTACTAAGATACCGCCCACTTGGGCGGTATTTTTTTACTTTTCAACTTAAGTTACATCTATTCAAT
TAAGTCGACATTGCTAAATC

Product: methyl-accepting chemotaxis sensory transducer

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 667; Mature: 667

Protein sequence:

>667_residues
MNYKNWPIAKQIGALAFILTLIIFCILSTLSYKSASNVLEDKGISAMKAEMHAVSDMLELQYDSLLQLARRNADVFKEMY
PGQFSRPDKTVNVLGVSTPALLHEKEQINSSKSKVDRFANLTGGTATVFVRDGDDFVRIASSLKKADGSRALGTFLGKTH
PGYPTLIKGEVYEGYAKLFGKDYMTVYRPIKDAQGQVIGILYIGFEITQSLTQLQAAVNKITLEETGSFLLMRKADNVLV
ANPKFNAGEPVTESMLDGLTLSQATQDQSEFRYTNSKNQPMFAYTQTVNGWNWMLIGQVNANELNEESLLLLTINAIVAV
TGIVLITVLLSFVLIRSLKPLHALQRHMEILGTGDFSHPLPPSAYDSQNEVDKITTSVSTMSSELRQLISALQASVQSIE
QQASKAQRIAKQNGEEAQALMQQTDQIATAIEEMSTSIRDVANHAQDGANQSQQVDLAAKEGQQQQTQVVQDLLKLSQQL
SSSHQAVEKVSQESEAISKVTEVINSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAQRTQSSILEISQTIDKL
QSQVKTTTSQMAQSHQLGIASANQGEETGKQLEEITRRIGELAISSRNIASATEQQSSVAQEITHNLHQISELANEGEHR
AAETVNSANDLSSLAVALKQQISQFKA

Sequences:

>Translated_667_residues
MNYKNWPIAKQIGALAFILTLIIFCILSTLSYKSASNVLEDKGISAMKAEMHAVSDMLELQYDSLLQLARRNADVFKEMY
PGQFSRPDKTVNVLGVSTPALLHEKEQINSSKSKVDRFANLTGGTATVFVRDGDDFVRIASSLKKADGSRALGTFLGKTH
PGYPTLIKGEVYEGYAKLFGKDYMTVYRPIKDAQGQVIGILYIGFEITQSLTQLQAAVNKITLEETGSFLLMRKADNVLV
ANPKFNAGEPVTESMLDGLTLSQATQDQSEFRYTNSKNQPMFAYTQTVNGWNWMLIGQVNANELNEESLLLLTINAIVAV
TGIVLITVLLSFVLIRSLKPLHALQRHMEILGTGDFSHPLPPSAYDSQNEVDKITTSVSTMSSELRQLISALQASVQSIE
QQASKAQRIAKQNGEEAQALMQQTDQIATAIEEMSTSIRDVANHAQDGANQSQQVDLAAKEGQQQQTQVVQDLLKLSQQL
SSSHQAVEKVSQESEAISKVTEVINSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAQRTQSSILEISQTIDKL
QSQVKTTTSQMAQSHQLGIASANQGEETGKQLEEITRRIGELAISSRNIASATEQQSSVAQEITHNLHQISELANEGEHR
AAETVNSANDLSSLAVALKQQISQFKA
>Mature_667_residues
MNYKNWPIAKQIGALAFILTLIIFCILSTLSYKSASNVLEDKGISAMKAEMHAVSDMLELQYDSLLQLARRNADVFKEMY
PGQFSRPDKTVNVLGVSTPALLHEKEQINSSKSKVDRFANLTGGTATVFVRDGDDFVRIASSLKKADGSRALGTFLGKTH
PGYPTLIKGEVYEGYAKLFGKDYMTVYRPIKDAQGQVIGILYIGFEITQSLTQLQAAVNKITLEETGSFLLMRKADNVLV
ANPKFNAGEPVTESMLDGLTLSQATQDQSEFRYTNSKNQPMFAYTQTVNGWNWMLIGQVNANELNEESLLLLTINAIVAV
TGIVLITVLLSFVLIRSLKPLHALQRHMEILGTGDFSHPLPPSAYDSQNEVDKITTSVSTMSSELRQLISALQASVQSIE
QQASKAQRIAKQNGEEAQALMQQTDQIATAIEEMSTSIRDVANHAQDGANQSQQVDLAAKEGQQQQTQVVQDLLKLSQQL
SSSHQAVEKVSQESEAISKVTEVINSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAQRTQSSILEISQTIDKL
QSQVKTTTSQMAQSHQLGIASANQGEETGKQLEEITRRIGELAISSRNIASATEQQSSVAQEITHNLHQISELANEGEHR
AAETVNSANDLSSLAVALKQQISQFKA

Specific function: Mediates Taxis To The Sugars Ribose And Galactose VIa An Interaction With The Periplasmic Ribose- Or Galactose-Binding Proteins. Chemotactic-Signal Transducers Respond To Changes In The Concentration Of Attractants And Repellents In The Environment, Trans

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787690, Length=398, Percent_Identity=28.643216080402, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI2367378, Length=310, Percent_Identity=29.3548387096774, Blast_Score=109, Evalue=5e-25,
Organism=Escherichia coli, GI1788194, Length=251, Percent_Identity=32.6693227091633, Blast_Score=102, Evalue=8e-23,
Organism=Escherichia coli, GI1788195, Length=283, Percent_Identity=30.7420494699647, Blast_Score=100, Evalue=5e-22,
Organism=Escherichia coli, GI1789453, Length=263, Percent_Identity=29.277566539924, Blast_Score=87, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 72846; Mature: 72846

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYKNWPIAKQIGALAFILTLIIFCILSTLSYKSASNVLEDKGISAMKAEMHAVSDMLEL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
QYDSLLQLARRNADVFKEMYPGQFSRPDKTVNVLGVSTPALLHEKEQINSSKSKVDRFAN
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHCHHHHHHHHHHC
LTGGTATVFVRDGDDFVRIASSLKKADGSRALGTFLGKTHPGYPTLIKGEVYEGYAKLFG
CCCCEEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCEEECHHHHHHHHHHC
KDYMTVYRPIKDAQGQVIGILYIGFEITQSLTQLQAAVNKITLEETGSFLLMRKADNVLV
CHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEE
ANPKFNAGEPVTESMLDGLTLSQATQDQSEFRYTNSKNQPMFAYTQTVNGWNWMLIGQVN
ECCCCCCCCCHHHHHHCCCHHHHHHCHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEECC
ANELNEESLLLLTINAIVAVTGIVLITVLLSFVLIRSLKPLHALQRHMEILGTGDFSHPL
CCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCC
PPSAYDSQNEVDKITTSVSTMSSELRQLISALQASVQSIEQQASKAQRIAKQNGEEAQAL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
MQQTDQIATAIEEMSTSIRDVANHAQDGANQSQQVDLAAKEGQQQQTQVVQDLLKLSQQL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
SSSHQAVEKVSQESEAISKVTEVINSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHH
TLAQRTQSSILEISQTIDKLQSQVKTTTSQMAQSHQLGIASANQGEETGKQLEEITRRIG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
ELAISSRNIASATEQQSSVAQEITHNLHQISELANEGEHRAAETVNSANDLSSLAVALKQ
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
QISQFKA
HHHHHCC
>Mature Secondary Structure
MNYKNWPIAKQIGALAFILTLIIFCILSTLSYKSASNVLEDKGISAMKAEMHAVSDMLEL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
QYDSLLQLARRNADVFKEMYPGQFSRPDKTVNVLGVSTPALLHEKEQINSSKSKVDRFAN
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHCHHHHHHHHHHC
LTGGTATVFVRDGDDFVRIASSLKKADGSRALGTFLGKTHPGYPTLIKGEVYEGYAKLFG
CCCCEEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCEEECHHHHHHHHHHC
KDYMTVYRPIKDAQGQVIGILYIGFEITQSLTQLQAAVNKITLEETGSFLLMRKADNVLV
CHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEE
ANPKFNAGEPVTESMLDGLTLSQATQDQSEFRYTNSKNQPMFAYTQTVNGWNWMLIGQVN
ECCCCCCCCCHHHHHHCCCHHHHHHCHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEECC
ANELNEESLLLLTINAIVAVTGIVLITVLLSFVLIRSLKPLHALQRHMEILGTGDFSHPL
CCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCC
PPSAYDSQNEVDKITTSVSTMSSELRQLISALQASVQSIEQQASKAQRIAKQNGEEAQAL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
MQQTDQIATAIEEMSTSIRDVANHAQDGANQSQQVDLAAKEGQQQQTQVVQDLLKLSQQL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
SSSHQAVEKVSQESEAISKVTEVINSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHH
TLAQRTQSSILEISQTIDKLQSQVKTTTSQMAQSHQLGIASANQGEETGKQLEEITRRIG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
ELAISSRNIASATEQQSSVAQEITHNLHQISELANEGEHRAAETVNSANDLSSLAVALKQ
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
QISQFKA
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1548224 [H]