Click here to switch to the map view.

The map label for this gene is trbF [H]

Identifier: 117919737

GI number: 117919737

Start: 1500181

End: 1500885

Strand: Direct

Name: trbF [H]

Synonym: Shewana3_1289

Alternate gene names: 117919737

Gene position: 1500181-1500885 (Clockwise)

Preceding gene: 117919736

Following gene: 117919738

Centisome position: 30.17

GC content: 65.96

Gene sequence:

>705_bases
ATGCGATTCAAACGACCGCAGGTGCGCTACGCCGATACGCCGCAGCCTGCCACCCCGTATCAAGCCGCCGCCCAGGTGTG
GGACGAGCGTATCGGCTCGGCCCGCGTGCAGGCCAAGAACTGGCGGCTGATGGCCTTCGGCTGCCTGGTGCTCGCGCTAC
TGATGGCCGGTGGCCTGGTATGGCGCTCGGCGCAGTCCATCGTGACGCCTTACGTCATCGAGGTCGATCAGGCCGGACAG
GTTCGCGCCGTGGGCGAGGCCGCCACGCCGTACCGGCCCGCCGATGCGCAGATCGCGCACCACCTGGCACGCTTCGTCAG
CCTGGTGCGCTCGCTGTCCATCGACCCCATCGTCGTGCGGCAAAACTGGCTCGATGCCTACGACTACACCACCGACCGGG
GCGCGGCCGTGCTCAACGACTACGCCCGCACCAATGATCCATTCGCTCGCATCGGCAAGGAATCGGTGACGGTGCAGATC
ACCAGCGTGGTGCGTGCCAGCGACACGTCTTTCAACGTGCGCTGGACGGAGCAACGGTTCGTCAATGGCGCACCCGCTGG
CACCGAACGCTGGAACGCCGTGCTTTCCACCGTCCTGCAAACCCCGCGCACCGAACAGCGCCTGCGCAAGAACCCGTTGG
GTATCTACGTCAACGGCCTGTCGTGGAGCCGCGAACTGGATTCTTCCGAAGGAGCCAAGCCATGA

Upstream 100 bases:

>100_bases
GACCACCACCGCCCACACGCTGCGCGGTGGCGACGGCGGCGGCTCAGGGCAAGGCCCGAGCCTGCGCGATTCCGATACCT
GACCCTCAAGGAGAACACCC

Downstream 100 bases:

>100_bases
ACCTGCCTTTCCGCTTTCACGCTTTGCCGTTGATCCTGCTTGCCCTCGCGGGCTGCGCCTCGCAGGGCAAGCCGCCGCCG
ACCATCTCACTTGATGAGTC

Product: conjugal transfer protein TrbF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MRFKRPQVRYADTPQPATPYQAAAQVWDERIGSARVQAKNWRLMAFGCLVLALLMAGGLVWRSAQSIVTPYVIEVDQAGQ
VRAVGEAATPYRPADAQIAHHLARFVSLVRSLSIDPIVVRQNWLDAYDYTTDRGAAVLNDYARTNDPFARIGKESVTVQI
TSVVRASDTSFNVRWTEQRFVNGAPAGTERWNAVLSTVLQTPRTEQRLRKNPLGIYVNGLSWSRELDSSEGAKP

Sequences:

>Translated_234_residues
MRFKRPQVRYADTPQPATPYQAAAQVWDERIGSARVQAKNWRLMAFGCLVLALLMAGGLVWRSAQSIVTPYVIEVDQAGQ
VRAVGEAATPYRPADAQIAHHLARFVSLVRSLSIDPIVVRQNWLDAYDYTTDRGAAVLNDYARTNDPFARIGKESVTVQI
TSVVRASDTSFNVRWTEQRFVNGAPAGTERWNAVLSTVLQTPRTEQRLRKNPLGIYVNGLSWSRELDSSEGAKP
>Mature_234_residues
MRFKRPQVRYADTPQPATPYQAAAQVWDERIGSARVQAKNWRLMAFGCLVLALLMAGGLVWRSAQSIVTPYVIEVDQAGQ
VRAVGEAATPYRPADAQIAHHLARFVSLVRSLSIDPIVVRQNWLDAYDYTTDRGAAVLNDYARTNDPFARIGKESVTVQI
TSVVRASDTSFNVRWTEQRFVNGAPAGTERWNAVLSTVLQTPRTEQRLRKNPLGIYVNGLSWSRELDSSEGAKP

Specific function: Unknown

COG id: COG3701

COG function: function code U; Type IV secretory pathway, TrbF components

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007430 [H]

Pfam domain/function: PF04335 VirB8 [H]

EC number: NA

Molecular weight: Translated: 26088; Mature: 26088

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFKRPQVRYADTPQPATPYQAAAQVWDERIGSARVQAKNWRLMAFGCLVLALLMAGGLV
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHCCHH
WRSAQSIVTPYVIEVDQAGQVRAVGEAATPYRPADAQIAHHLARFVSLVRSLSIDPIVVR
HHHHHHHHCCEEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEE
QNWLDAYDYTTDRGAAVLNDYARTNDPFARIGKESVTVQITSVVRASDTSFNVRWTEQRF
CCCHHHHCCCCCCCHHHHHHHHHCCCHHHHHCCCCEEEEEEEEEEECCCCEEEEECHHHH
VNGAPAGTERWNAVLSTVLQTPRTEQRLRKNPLGIYVNGLSWSRELDSSEGAKP
CCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRFKRPQVRYADTPQPATPYQAAAQVWDERIGSARVQAKNWRLMAFGCLVLALLMAGGLV
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHCCHH
WRSAQSIVTPYVIEVDQAGQVRAVGEAATPYRPADAQIAHHLARFVSLVRSLSIDPIVVR
HHHHHHHHCCEEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEE
QNWLDAYDYTTDRGAAVLNDYARTNDPFARIGKESVTVQITSVVRASDTSFNVRWTEQRF
CCCHHHHCCCCCCCHHHHHHHHHCCCHHHHHCCCCEEEEEEEEEEECCCCEEEEECHHHH
VNGAPAGTERWNAVLSTVLQTPRTEQRLRKNPLGIYVNGLSWSRELDSSEGAKP
CCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]