Click here to switch to the map view.

The map label for this gene is yfjY [C]

Identifier: 117919701

GI number: 117919701

Start: 1466554

End: 1467063

Strand: Direct

Name: yfjY [C]

Synonym: Shewana3_1252

Alternate gene names: 117919701

Gene position: 1466554-1467063 (Clockwise)

Preceding gene: 117919700

Following gene: 117919708

Centisome position: 29.5

GC content: 55.88

Gene sequence:

>510_bases
ATGACACAACTGTCCTTTTCCTCGTTCGATTCCTCTCTGCTGGTCCGTGACGCACAAGGGCGCTACCTGCCGGCGTCGGT
AGATCAGATTCTTGACGCCGCGCGTCAGGTCATCGACCAGAAAATACAGCGTGGTATGTCCTTCACCTCACCAACACTTG
TCAAAGAGTACCTGTGTGCCAAGCTGGCTGGTTTCGAGCACGAAGTCTTCGCAGTACTGTTCCTAGACTCGCAGCATCGC
TTGATCGAATACACCGAGATGTTCAGGGGCACCATCGACAGTGCTTCGGTGTATCCACGCGAGGTGGTCAAGGAGGCCCT
GAGGCTCAATGCGGCGGCGGTGATATTCTCGCATAATCACCCCAGCGGAAATTCCGAGCCGAGCCGTGCCGATGAAGCCA
TCACCAATCGGCTCAAGGAGGCTCTGGCTCTGGTGGATGTACGCTCGCTGGATCATGTCATTGTCGCCGGTAGCGATACT
ATGTCCTTTGCCGAACGTGGCCTGATCTGA

Upstream 100 bases:

>100_bases
ACGCTTGCGGCCATGGCCGTTCATGACCCTGTGACAGCTTGCGCTGCGCCGTGCTGACGCCGGTTCCGGGCAATTCCGCC
CGAGCAACCGGAGCACGATC

Downstream 100 bases:

>100_bases
CCCAGGGGGCTTCGGCCCCCTTTTTTTGCTTCGCCGGACTTTGCTACTTGGCTCCACTGCGTTCACGCTGCCGGAATCGT
TTGATATATGCATCATCGAC

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 168

Protein sequence:

>169_residues
MTQLSFSSFDSSLLVRDAQGRYLPASVDQILDAARQVIDQKIQRGMSFTSPTLVKEYLCAKLAGFEHEVFAVLFLDSQHR
LIEYTEMFRGTIDSASVYPREVVKEALRLNAAAVIFSHNHPSGNSEPSRADEAITNRLKEALALVDVRSLDHVIVAGSDT
MSFAERGLI

Sequences:

>Translated_169_residues
MTQLSFSSFDSSLLVRDAQGRYLPASVDQILDAARQVIDQKIQRGMSFTSPTLVKEYLCAKLAGFEHEVFAVLFLDSQHR
LIEYTEMFRGTIDSASVYPREVVKEALRLNAAAVIFSHNHPSGNSEPSRADEAITNRLKEALALVDVRSLDHVIVAGSDT
MSFAERGLI
>Mature_168_residues
TQLSFSSFDSSLLVRDAQGRYLPASVDQILDAARQVIDQKIQRGMSFTSPTLVKEYLCAKLAGFEHEVFAVLFLDSQHRL
IEYTEMFRGTIDSASVYPREVVKEALRLNAAAVIFSHNHPSGNSEPSRADEAITNRLKEALALVDVRSLDHVIVAGSDTM
SFAERGLI

Specific function: Unknown

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI1788997, Length=152, Percent_Identity=46.7105263157895, Blast_Score=144, Evalue=3e-36,
Organism=Escherichia coli, GI87082300, Length=145, Percent_Identity=42.0689655172414, Blast_Score=143, Evalue=6e-36,
Organism=Escherichia coli, GI2367100, Length=153, Percent_Identity=45.7516339869281, Blast_Score=139, Evalue=8e-35,
Organism=Escherichia coli, GI1788312, Length=141, Percent_Identity=47.5177304964539, Blast_Score=137, Evalue=3e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 18746; Mature: 18615

Theoretical pI: Translated: 5.60; Mature: 5.60

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQLSFSSFDSSLLVRDAQGRYLPASVDQILDAARQVIDQKIQRGMSFTSPTLVKEYLCA
CCCCCCCCCCCHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
KLAGFEHEVFAVLFLDSQHRLIEYTEMFRGTIDSASVYPREVVKEALRLNAAAVIFSHNH
HHCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCHHEEEEECCC
PSGNSEPSRADEAITNRLKEALALVDVRSLDHVIVAGSDTMSFAERGLI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHCCCC
>Mature Secondary Structure 
TQLSFSSFDSSLLVRDAQGRYLPASVDQILDAARQVIDQKIQRGMSFTSPTLVKEYLCA
CCCCCCCCCCHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
KLAGFEHEVFAVLFLDSQHRLIEYTEMFRGTIDSASVYPREVVKEALRLNAAAVIFSHNH
HHCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCHHEEEEECCC
PSGNSEPSRADEAITNRLKEALALVDVRSLDHVIVAGSDTMSFAERGLI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]