Click here to switch to the map view.

The map label for this gene is 117919699

Identifier: 117919699

GI number: 117919699

Start: 1463938

End: 1465479

Strand: Direct

Name: 117919699

Synonym: Shewana3_1250

Alternate gene names: NA

Gene position: 1463938-1465479 (Clockwise)

Preceding gene: 117919697

Following gene: 117919700

Centisome position: 29.44

GC content: 58.95

Gene sequence:

>1542_bases
ATGTCTGCCAAGAGGATTGCAATGCGTAAAATTCGTGAAGTACTGCGACTGCGGCTGGAAGCTGACCTCTCTGTTCGCCA
AATCAGTATCTGTACCAAGGTCAGTGTCGGCTCCATCCAGAAACTCCTCAAAAGTGCCCAGGCGCTCGGCCTTACCTGGC
CCTTACCTACCGAGCTTGATGATGGCCGACTGGCTGCCCTGTTCTATCCGCAGGCCGATACCACCATCTCGGCCCGCCAT
GTTGTGCCGGATTGGCCCTCTGTCCATCAGGAGCTCAAGCGCAAGGGGGTCTCCAAACAGCTGCTCTGGGAGGAGTACAC
CCAGCGCTATCCCAATAGCTGTTACAGCTACTCCCAGTTCTGTGACCGTTACAAGTCCTGGTGTCAGTTGCAAAAGCGCT
CCATGCGCCAGATCCACAAGGCGGGGGAAAAGCTCTTTATCGACTACTGCGGGCCCACGGTGCCCATCGTGTCGCCGACC
ACGGGTGAGGTCCGTCAGGCACAAGTCTTTGTCGCCGTGCTCGGTGCGTCCAACTACACCTTTGCCGAGGCCACCTGGTC
ACAGTCACTGCCGGACTGGCTGCAAAGCCATGTCCGTGCCTTTGAGTTTTTCGGCGGGACACCGGCACTGCTGATCCCCG
ACAACCTCAAGAGCGGTGTCAGCAAGGCTTGCCGATACGATCCCGAGCTCAACCCCAGCTACCAGCAGTTGGCCGAGCAC
TATCAGGTGGCGGTGATGCCAGCTCGTCCTTACAAGCCCAAGGACAAGGCCAAGGCGGAGGTGGGTGTGCAGATCGTCGA
GCGCTGGATCCTGGCCCGTCTACGCCATCAGACCTTCTTCTCGCTTGCCGAACTCAACCAGTGCATCCGTGCCTTGCTGA
ACGAACTCAACGAGCGTCCGTTCAAGCAACTGCCCGGTAACCGACGTGACGCATTTGAGCAGTTGGACCGCCCGGCACTG
GGACCACTGCCGGTGCATCCCTATCGCTATGTCGCCATCAAAACGGTCAAGGTCAACATCGACTATCACGTCAGTTATGA
GCAGCACCATTACTCGGTGCCACACCAGTATGTGGGTCAGCAACTGGAGCTCCATGCGGGCGATACCCTGCTTCAGGTCT
ATCACCAGCAACAGCTGGTCGCGAGCCATCCACGTAAAACCATCCCGGGGATGAGCACGCTCCCTGAGCACATGCCGGAA
CGTCACAGCAAGCAGCAACGCTGGACCCCAGGGCGTCTTAAACAGTGGGCTGCTGACATCGGACCGAGCACCTTGTGCTG
GGTTAGCGAACGGTTGGAAGAGAAAGCCCATGCCGAGCAGGCATACCGACTCTGCCTGGGGCTGCTGAGTCTTAGCCGGG
AGTATCCGCCATCACGGGTTGAAGCCTGTTGCCAGTTGGCCAACCGGGAAGGTCTGGTGCGACTCAAACAGCTCAAGTCG
GTGCTGACCAGTGGCCGCGACCAACTGCCCGCAAGCCCGCTGAGCTACCCAGAGTTACCGCAAGAGCACGAGAACATCCG
TGGCCCCCAGAGCTTCCACTAA

Upstream 100 bases:

>100_bases
TTCAACATCCCGGAATCACTGTTCACATTCACCGGAATCATCCTTAACGCATTGATTTAAAAACCTTTGATACGCTCTCC
CTTTTGCCAGGGAAGAGCCT

Downstream 100 bases:

>100_bases
AGAGGATACGTCCCATGACCCAACAAACGCTGACCCGCTTGAGACACCTGAAACTGACCGGCATGGCGGATGCCGTGCAA
CAACAACTGGAACAGGCAAG

Product: integrase catalytic subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 513; Mature: 512

Protein sequence:

>513_residues
MSAKRIAMRKIREVLRLRLEADLSVRQISICTKVSVGSIQKLLKSAQALGLTWPLPTELDDGRLAALFYPQADTTISARH
VVPDWPSVHQELKRKGVSKQLLWEEYTQRYPNSCYSYSQFCDRYKSWCQLQKRSMRQIHKAGEKLFIDYCGPTVPIVSPT
TGEVRQAQVFVAVLGASNYTFAEATWSQSLPDWLQSHVRAFEFFGGTPALLIPDNLKSGVSKACRYDPELNPSYQQLAEH
YQVAVMPARPYKPKDKAKAEVGVQIVERWILARLRHQTFFSLAELNQCIRALLNELNERPFKQLPGNRRDAFEQLDRPAL
GPLPVHPYRYVAIKTVKVNIDYHVSYEQHHYSVPHQYVGQQLELHAGDTLLQVYHQQQLVASHPRKTIPGMSTLPEHMPE
RHSKQQRWTPGRLKQWAADIGPSTLCWVSERLEEKAHAEQAYRLCLGLLSLSREYPPSRVEACCQLANREGLVRLKQLKS
VLTSGRDQLPASPLSYPELPQEHENIRGPQSFH

Sequences:

>Translated_513_residues
MSAKRIAMRKIREVLRLRLEADLSVRQISICTKVSVGSIQKLLKSAQALGLTWPLPTELDDGRLAALFYPQADTTISARH
VVPDWPSVHQELKRKGVSKQLLWEEYTQRYPNSCYSYSQFCDRYKSWCQLQKRSMRQIHKAGEKLFIDYCGPTVPIVSPT
TGEVRQAQVFVAVLGASNYTFAEATWSQSLPDWLQSHVRAFEFFGGTPALLIPDNLKSGVSKACRYDPELNPSYQQLAEH
YQVAVMPARPYKPKDKAKAEVGVQIVERWILARLRHQTFFSLAELNQCIRALLNELNERPFKQLPGNRRDAFEQLDRPAL
GPLPVHPYRYVAIKTVKVNIDYHVSYEQHHYSVPHQYVGQQLELHAGDTLLQVYHQQQLVASHPRKTIPGMSTLPEHMPE
RHSKQQRWTPGRLKQWAADIGPSTLCWVSERLEEKAHAEQAYRLCLGLLSLSREYPPSRVEACCQLANREGLVRLKQLKS
VLTSGRDQLPASPLSYPELPQEHENIRGPQSFH
>Mature_512_residues
SAKRIAMRKIREVLRLRLEADLSVRQISICTKVSVGSIQKLLKSAQALGLTWPLPTELDDGRLAALFYPQADTTISARHV
VPDWPSVHQELKRKGVSKQLLWEEYTQRYPNSCYSYSQFCDRYKSWCQLQKRSMRQIHKAGEKLFIDYCGPTVPIVSPTT
GEVRQAQVFVAVLGASNYTFAEATWSQSLPDWLQSHVRAFEFFGGTPALLIPDNLKSGVSKACRYDPELNPSYQQLAEHY
QVAVMPARPYKPKDKAKAEVGVQIVERWILARLRHQTFFSLAELNQCIRALLNELNERPFKQLPGNRRDAFEQLDRPALG
PLPVHPYRYVAIKTVKVNIDYHVSYEQHHYSVPHQYVGQQLELHAGDTLLQVYHQQQLVASHPRKTIPGMSTLPEHMPER
HSKQQRWTPGRLKQWAADIGPSTLCWVSERLEEKAHAEQAYRLCLGLLSLSREYPPSRVEACCQLANREGLVRLKQLKSV
LTSGRDQLPASPLSYPELPQEHENIRGPQSFH

Specific function: Required for the transposition of the insertion element (Potential) [H]

COG id: COG4584

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017895
- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 58755; Mature: 58624

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAKRIAMRKIREVLRLRLEADLSVRQISICTKVSVGSIQKLLKSAQALGLTWPLPTELD
CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCC
DGRLAALFYPQADTTISARHVVPDWPSVHQELKRKGVSKQLLWEEYTQRYPNSCYSYSQF
CCCEEEEEECCCCCEEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHH
CDRYKSWCQLQKRSMRQIHKAGEKLFIDYCGPTVPIVSPTTGEVRQAQVFVAVLGASNYT
HHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHEEHEECCCCCE
FAEATWSQSLPDWLQSHVRAFEFFGGTPALLIPDNLKSGVSKACRYDPELNPSYQQLAEH
EEHHHHHCCCHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHCCCCCCCCCHHHHHHH
YQVAVMPARPYKPKDKAKAEVGVQIVERWILARLRHQTFFSLAELNQCIRALLNELNERP
HEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
FKQLPGNRRDAFEQLDRPALGPLPVHPYRYVAIKTVKVNIDYHVSYEQHHYSVPHQYVGQ
HHHCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEEEEEEEEEHHHCCCCCHHHCCC
QLELHAGDTLLQVYHQQQLVASHPRKTIPGMSTLPEHMPERHSKQQRWTPGRLKQWAADI
EEEECCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHC
GPSTLCWVSERLEEKAHAEQAYRLCLGLLSLSREYPPSRVEACCQLANREGLVRLKQLKS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHH
VLTSGRDQLPASPLSYPELPQEHENIRGPQSFH
HHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC
>Mature Secondary Structure 
SAKRIAMRKIREVLRLRLEADLSVRQISICTKVSVGSIQKLLKSAQALGLTWPLPTELD
CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCC
DGRLAALFYPQADTTISARHVVPDWPSVHQELKRKGVSKQLLWEEYTQRYPNSCYSYSQF
CCCEEEEEECCCCCEEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHH
CDRYKSWCQLQKRSMRQIHKAGEKLFIDYCGPTVPIVSPTTGEVRQAQVFVAVLGASNYT
HHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHEEHEECCCCCE
FAEATWSQSLPDWLQSHVRAFEFFGGTPALLIPDNLKSGVSKACRYDPELNPSYQQLAEH
EEHHHHHCCCHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHCCCCCCCCCHHHHHHH
YQVAVMPARPYKPKDKAKAEVGVQIVERWILARLRHQTFFSLAELNQCIRALLNELNERP
HEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
FKQLPGNRRDAFEQLDRPALGPLPVHPYRYVAIKTVKVNIDYHVSYEQHHYSVPHQYVGQ
HHHCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEEEEEEEEEHHHCCCCCHHHCCC
QLELHAGDTLLQVYHQQQLVASHPRKTIPGMSTLPEHMPERHSKQQRWTPGRLKQWAADI
EEEECCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHC
GPSTLCWVSERLEEKAHAEQAYRLCLGLLSLSREYPPSRVEACCQLANREGLVRLKQLKS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHH
VLTSGRDQLPASPLSYPELPQEHENIRGPQSFH
HHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7518087 [H]